Pairwise Alignments
Query, 1217 a.a., hypothetical protein from Pseudomonas stutzeri RCH2
Subject, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056
Score = 159 bits (403), Expect = 9e-43
Identities = 245/964 (25%), Positives = 385/964 (39%), Gaps = 166/964 (17%)
Query: 1 MKILAIRLKNLASLAGEQVIDFTTEPLASAGLFAITGPTGAGKSTILDALCLALFGSTPR 60
M+ L + L+ AG + IDFT L A LF I G TGAGKS+ILDA+C AL+G T
Sbjct: 1 MRPLKLILQAFGPFAGREEIDFTK--LGDAPLFLINGATGAGKSSILDAICYALYGETT- 57
Query: 61 LDSVSPLNKVPDVEAEIGGGDERNLLRRGCGAGFAE-VDFVGVDGHRYRARWEVKRA--- 116
G ER + C E + V + AR+++ R
Sbjct: 58 -------------------GSERTGDQMRCDYAAPESLTEVIFEFELAGARYQITRQPDQ 98
Query: 117 ---REKVDGRLQAS-SQSLTDLDS-GTLLASGKKREFKELLEARLGLTLAQFTRAVLLAQ 171
+++ +G + S S +L L S G L + K + + +GL + QF + ++L Q
Sbjct: 99 EIPKKRGEGMTKKSHSATLVALKSDGNELIANKPNPVAKAVVELMGLDVKQFRQVMVLPQ 158
Query: 172 SEFSAFLKADDNERGTLLEKLTDTGLYSRLGQAAFEAAKQAKESLTRLEQQ-AGGLQPLE 230
+F L A+ ER + +L T LYS++ +A FE A ++ +QQ G L +
Sbjct: 159 GKFRELLTANSKEREQIFGQLFQTQLYSQIERALFERAAGIRKEKEEFDQQIKGTLSVVG 218
Query: 231 PEQRDVLEREHQAQLEELKKLQQQLKELEAQRQWLSELQRLENEREAARQQLQDAEDERE 290
E + L+ E L Q QLK Q+QW +E +A Q + E +
Sbjct: 219 LESEEQLQTELTELAPVLTHAQSQLK--AEQQQW--------DETKAHYQAALELEQQ-- 266
Query: 291 SLTAARRILDLFELLAPQRHRFLRQQELEPLLGKAAESLTRLQHEAQSLQQRLDSLQRQC 350
F+R+Q+L + E T ++ Q QRQ
Sbjct: 267 ---------------------FIRKQQLVVEIATHQEQATHIEMLRQ---------QRQQ 296
Query: 351 EAAGNDLRAAEQARQTAEPRLAQARREEERLSHLNADLASIREESAQADAAASAGEATLK 410
L A Q A+ L QA+ + E+ L + ++++ QA AS +
Sbjct: 297 AQKAARLTAVHQQWHQAQKNLQQAKLKVEQQQTLLQQAKAQQQQAQQASQQASLACEEVP 356
Query: 411 QLGDQQ---QRAAEQLATLTQQLETSAALQPLCVAWGGYRPRLQQAVQLAARLQQGQSEL 467
+L +Q+ QRA ++L L Q+ A + LQ A Q A LQQ +L
Sbjct: 357 KLNEQRITWQRAEQKL--LAQENVQQAVAKA--------ERELQLATQNALNLQQASEKL 406
Query: 468 PALQAQAEAAESQQSLAREALDNLQRERDSELGLAEQLAGLHRQLDEWRQAERETDALQQ 527
+Q L + L+ Q++R L Q A +++ + + + ERE L +
Sbjct: 407 ------------EQELQNQRLEWEQQQRQL-TRLEVQKARMNQLVQQVQAREREQSLLNE 453
Query: 528 LWAQQLTLTASQHELSNANSRQQAELDSLVPLGKQVRNDRDAAEQALKVTLALLERQRLA 587
L Q +L+ +Q + + AEQA K+T LE
Sbjct: 454 L---------------------QTAQQALLRFEQQHHHIQTQAEQA-KLTADKLE--FAW 489
Query: 588 RSENVEALRASLVPGEPCPVCGSDEHPWQQTDALVASLDRHDDSEAAHAQQALQEQDQRL 647
++ L +L EPCPVCGS EHP + + D +QA Q+Q +
Sbjct: 490 HTQRAAELALALTQNEPCPVCGSLEHPNKAQYS-------GDVVTKVQVEQARQQQQDWV 542
Query: 648 QELRDRHVALSTQLRQTQQRQSEVELQLQALAPRLLALPVHTRLLEQPEAERSQWLETQL 707
Q ++ A Q +T+Q + L + +AL L+EQ + S Q
Sbjct: 543 QRQQEAFHAWQQQGFKTEQIAQNLTTLSSELTLQQVAL--LNELIEQQQILHSDIAALQQ 600
Query: 708 TN---LKDQIASASQR-QQQLLALQQRSETLQQAWQAAREACVEATQQLARQRDALARDS 763
N LK QI QR + L+++++ QQAWQ + E LA R + +
Sbjct: 601 LNPDLLKRQIEEGEQRLAHTKMTLEKQNQNQQQAWQTLAQLQAE----LASLRQEIPPEL 656
Query: 764 QQLDEELLAFAELL-PVEQLQRWRENPAQTFMQLDASIATRLQQLQAQTEL-AEELRQCE 821
LD A + +E LQ+ + ++Q A+ QA E E RQ E
Sbjct: 657 SDLDTLRSAIGRVQNQIEILQKAEHTAREQWVQAQKQFASVQAAYQAAIEAHRESQRQQE 716
Query: 822 QRRSDEQLQQRHR--QEKQASCSARLS---------------EREKLLLACQQALRTSLG 864
+ S Q H ++ A +ARL+ ER +L QQAL L
Sbjct: 717 ETTSAWQQGLLHSGFSDESAYLAARLTDEAIVNIERQIAQYEERSAMLSGEQQALSRKLA 776
Query: 865 EQSSASAWQQQLDAAIQTARQAQTAIDQQLNESKLGLTRLHSEQQNCRQRHAELAQERDA 924
E++ + +L+ + QA+ + L +R+ Q+ +Q A+L Q+ A
Sbjct: 777 EKN-----RPELEPLLVKVTQAEEKMALALQAFTQHQSRMDGLQRVAKQL-ADLYQKNRA 830
Query: 925 LNAE 928
L AE
Sbjct: 831 LEAE 834
Score = 152 bits (384), Expect = 1e-40
Identities = 211/900 (23%), Positives = 386/900 (42%), Gaps = 133/900 (14%)
Query: 324 KAAESLTRLQHEAQSLQQRLDSLQRQCEAAGNDLRAAEQARQTAEPRLAQARREEERLSH 383
K S+ L+ E Q LQ L L A + L+A +Q + A E++
Sbjct: 211 KGTLSVVGLESEEQ-LQTELTELAPVLTHAQSQLKAEQQQWDETKAHYQAALELEQQF-- 267
Query: 384 LNADLASIREESAQADAAASAGEATLKQLGDQQQRAAEQLATLTQQLETSAALQPLCVAW 443
IR++ + A +AT ++ QQ++ A++ A LT + W
Sbjct: 268 -------IRKQQLVVEIATHQEQATHIEMLRQQRQQAQKAARLTAVHQQ----------W 310
Query: 444 GGYRPRLQQAVQLAARLQQGQSELPALQAQAEAAESQQSLAREALDNLQRERDSELGLAE 503
+ LQQA + Q + A Q QA+ A Q SLA E + L +R +
Sbjct: 311 HQAQKNLQQAKLKVEQQQTLLQQAKAQQQQAQQASQQASLACEEVPKLNEQRIT------ 364
Query: 504 QLAGLHRQLDEWRQAERETDALQQLWAQQLTLTASQHELSNANSRQQAELDSLVPLGKQV 563
W++AE++ A + + Q + ++ EL A + L +++
Sbjct: 365 -----------WQRAEQKLLAQENV---QQAVAKAERELQLATQNALNLQQASEKLEQEL 410
Query: 564 RNDRDAAEQALKVTLALLERQRLARSENVEALRASLVPGEPCPVCGSDEHPWQQTDALVA 623
+N R EQ + L LE Q+ ++ V+ ++A ++ +L+
Sbjct: 411 QNQRLEWEQQQR-QLTRLEVQKARMNQLVQQVQAR-----------------EREQSLL- 451
Query: 624 SLDRHDDSEAAHAQQALQEQDQRLQELRDRHVALSTQLRQTQQRQSEVEL--QLQALAPR 681
+E AQQAL +Q+ H + TQ Q + ++E Q A
Sbjct: 452 -------NELQTAQQALLRFEQQ-------HHHIQTQAEQAKLTADKLEFAWHTQRAAEL 497
Query: 682 LLALPVHTRL-----LEQPEAERSQWLETQLTNLKDQIASASQRQQQLLALQQRSETLQQ 736
LAL + LE P ++Q+ +T K Q+ A Q+QQ + QR +
Sbjct: 498 ALALTQNEPCPVCGSLEHPN--KAQYSGDVVT--KVQVEQARQQQQDWV---QRQQEAFH 550
Query: 737 AWQAAREACVEATQQLARQRDALARDSQQLDEELLAFAELLPVEQLQRWRENPAQTFMQL 796
AWQ T+Q+A+ L+ S+ +++ EL+ +Q+ L
Sbjct: 551 AWQQQGFK----TEQIAQNLTTLS--SELTLQQVALLNELIEQQQI-------------L 591
Query: 797 DASIATRLQQLQAQTELAEELRQCEQRRSDEQLQQRHRQEKQASCSARLSEREKLLLACQ 856
+ IA LQQL L ++ + EQR + ++ + + Q L++ + L + +
Sbjct: 592 HSDIAA-LQQLNPDL-LKRQIEEGEQRLAHTKMTLEKQNQNQQQAWQTLAQLQAELASLR 649
Query: 857 QALRTSLGEQSSASAWQQQLDAAIQTARQAQTAIDQQLNESKLGLTRLHSEQQNCRQRHA 916
Q + L + + + ++ I+ ++A+ +Q +++ + + Q + H
Sbjct: 650 QEIPPELSDLDTLRSAIGRVQNQIEILQKAEHTAREQWVQAQKQFASVQAAYQAAIEAHR 709
Query: 917 ELAQERDALNAELASWRAD--HPQLDDASLAQLLHMDDQLIAEARQRLRENSDSLTRCRE 974
E ++++ + +W+ H D S + D+ I +++ + +
Sbjct: 710 ESQRQQEETTS---AWQQGLLHSGFSDESAYLAARLTDEAIVNIERQIAQYEERSAM--- 763
Query: 975 RLDGCLNRLNLHKQQQSDAPDTEQLQQRYAEQLQQCEQADQRCAETRAQLIDDDKRRSQS 1034
L G L+ K + + P+ E L + + ++ A Q + ++++ + Q
Sbjct: 764 -LSGEQQALS-RKLAEKNRPELEPLLVKVTQAEEKMALALQAFTQHQSRMDGLQRVAKQL 821
Query: 1035 QALLTQIDAARAEHQRWGRIAALIGSSDGG--AFRKIAQAYNLDLLVQHANVQLRQLAR- 1091
L + A AE+Q G ++ + G + + LD ++ A+ +L +++R
Sbjct: 822 ADLYQKNRALEAEYQVVGTLSDIANGKTGAKVSLHRFVLGVLLDDVLLQASQRLMKMSRG 881
Query: 1092 RYRLKRG--------GSPLGLLVLDTEMGDELRSVHSLSGGETFLVSLALALGLASMA-- 1141
RY LKR GS L L+V D+ G + R V +LSGGE+F+ +L+LALGL+ +
Sbjct: 882 RYLLKRKEERAKGNVGSGLDLMVEDSYSG-KWRDVATLSGGESFMAALSLALGLSDVVQA 940
Query: 1142 -SSKLKIESLFIDEGFGSLDPESLQIAMDALDSLQAQGRKVAVISHVAEMHERIPVQIRV 1200
S +++++LFIDEGFGSLDPESL +A+ L LQ GR + +ISHV E+ E+I +++ V
Sbjct: 941 YSGGIRLDTLFIDEGFGSLDPESLDLAIQTLIDLQQGGRTIGIISHVTELKEQIGLRLDV 1000