Pairwise Alignments

Query, 411 a.a., exonuclease SbcD from Pseudomonas stutzeri RCH2

Subject, 379 a.a., exonuclease sbcCD subunit D from Vibrio cholerae E7946 ATCC 55056

 Score =  118 bits (295), Expect = 3e-31
 Identities = 108/336 (32%), Positives = 154/336 (45%), Gaps = 28/336 (8%)

Query: 1   MRLIHTSDWHLGQTLHGQDRDYEHAQFLAWLLDQLVAHRADALLIAGDVFDTVNPPLKAQ 60
           M+ +HTSDWHLG+  H      + +  LA L+D L  +  DA+++AGD++D   PP  A 
Sbjct: 1   MKFLHTSDWHLGRQFHQVSLLDDQSAVLAQLIDFLRDNPVDAVIVAGDIYDRSIPPTAAI 60

Query: 61  ERLYDFIVRTHEKLPQLDIVMIAGNHDSGGRIELPAPLMKRLNAHAVGRISWVAEGQLDH 120
           + L D +V       +  ++MI GNHD   R+   A  MK    H             D 
Sbjct: 61  D-LLDEVVSVICGELKTPLLMIPGNHDGAKRLGFAAKQMKNSGLHIFA----------DF 109

Query: 121 QRLLVP--LHDAN-GNTAAWCLTLPFLRPAEVTGMELGDDYMAGIRQVHERLIAAAETAR 177
           ++++ P  LH    G  A W   +P+  P  V      D  +      H+ L  +    R
Sbjct: 110 EQMMQPLVLHSPQAGEVAFW--GMPYHDPELVRHYYHND--ITTHDAAHQFLCESILAQR 165

Query: 178 QPGQALVAMSHAHMAGGAVSEESERNIVIGNAEALPASLFPESVAYVALGHLHKPQQVAG 237
            P Q  V +SH     GA+  ESER + IG ++ +    F     YVALGHLH+P Q+ G
Sbjct: 166 NPSQRHVLISHC-FVDGAMESESERPLSIGGSDRVDHRHF-LPFDYVALGHLHQP-QMKG 222

Query: 238 QARIRYSGSPLPLSFAEVNYPHQVLLVELDGDQLKNVEQLPVPRAVEMIRIGRASLAEVI 297
              IRYSGS +  SF E +      LVEL      +   +P+  A   +RI    L  ++
Sbjct: 223 AEHIRYSGSLMKYSFGEQHQNKGATLVELGQQGFISATHIPL-IAPHQMRIIEGELEAIL 281

Query: 298 AALEALPPTGLFDDNL--PWLEVRVLLDEPLPDLRQ 331
           AA    P     DD L    L+   +LD P+  LRQ
Sbjct: 282 AAGATDPQA---DDYLLVRLLDKHAILD-PMEKLRQ 313