Pairwise Alignments

Query, 444 a.a., Short chain fatty acids transporter from Pseudomonas stutzeri RCH2

Subject, 443 a.a., hypothetical Short chain fatty acid transporter (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  397 bits (1021), Expect = e-115
 Identities = 202/429 (47%), Positives = 299/429 (69%), Gaps = 7/429 (1%)

Query: 10  RLVNRYMPDPLVIAMGLTVLTMLLAVLVEGSSPLDVTRYWGGGFWNLLAFSMQMTVILLA 69
           +LV+RY+PDP +  + LT++ M+ AV+ E  +PLDV  YWG GFW LL+FSMQM ++L+A
Sbjct: 11  KLVDRYLPDPYIFVLLLTLVVMISAVVAEQKTPLDVISYWGDGFWALLSFSMQMLLVLVA 70

Query: 70  GYILARTPLVDGLLDRIAGTVRTPFAAIVVATLVGTIGSWLNWGFGLVIGSIVAQKLALK 129
           G++LA +P +  LLD IAG  ++   AI++ TLV    SW+NWGFGLV+G++ A+ LA K
Sbjct: 71  GFMLASSPPIKKLLDAIAGFAKSAPQAIILVTLVSLAASWINWGFGLVVGALFAKALARK 130

Query: 130 VPGLHYPLVIAAAFSGFSVYGIGLSGSVPLLIATEGHFLQDRMGLIPLSETIFSAPLLIA 189
           +  + Y L++A+A+SGF V+  GL+GS+PL IAT GHF + ++G+IP S+TIF++  L+ 
Sbjct: 131 LR-VDYRLLVASAYSGFVVWHGGLAGSIPLTIATAGHFAEAQIGIIPTSDTIFASFNLLL 189

Query: 190 SALVVLTLPLFNAWLHPKNPRQIVEIDPTTVA-IPFEPSLAGNTEATL---ADRMNHSKV 245
             ++ + +PL N ++ P++ +  + IDP  +  +  E S  G+    +   AD++ +S++
Sbjct: 190 VLILFVVMPLVNRFMLPED-KDSIYIDPKALEDVSSEESNTGHAPNAMMRPADKLENSRL 248

Query: 246 TGIVIGALGLFYVGLRFS-DGGSLDLNTVNFIFVFLGILLFASPARYLAALAEGVKIVSG 304
            G  +G  GL Y+G  F+  GGSL+LN VNF+F+FL I+L  +P   L +L E +K  +G
Sbjct: 249 LGWSVGGAGLVYLGYYFAVQGGSLNLNLVNFLFLFLAIVLHQTPRSLLLSLNEAIKGGAG 308

Query: 305 IIIQYPFYAGIMGVLVGSGLVVSFAELFVRISTAETLPIWSFISGGLINILAPSGGGQWA 364
           I+IQ+PFYAGIM V++ SGL  S +E FV I++AE+LP WSFIS G++NI  PSGGGQWA
Sbjct: 309 IVIQFPFYAGIMAVMMQSGLAQSISEGFVAIASAESLPFWSFISAGIVNIFVPSGGGQWA 368

Query: 365 MQGPVVIEAARELNASLAATALGVQVGDQWTNMIQPFWILPALAISKLKLRDVMGYMVLI 424
           +Q P+++ AA  L A +A  A+ V  GD WTN+IQPFW LP LAI+ LK RD+MG+ ++ 
Sbjct: 369 VQAPIMLPAAEALGADVARVAMAVAWGDAWTNLIQPFWALPVLAIAGLKARDIMGFCLMQ 428

Query: 425 LGYLGLIFS 433
           L   G+I S
Sbjct: 429 LIITGVIIS 437