Pairwise Alignments

Query, 441 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

Subject, 622 a.a., ATP-dependent RNA helicase RhlE from Pseudomonas fluorescens FW300-N2E2

 Score =  383 bits (984), Expect = e-111
 Identities = 212/454 (46%), Positives = 290/454 (63%), Gaps = 19/454 (4%)

Query: 1   MTFASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60
           M+FASLGL + L+  +E   Y +PTPVQ  AIPAVL+GRDLM AAQTGTGKT GFALP+L
Sbjct: 1   MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  QRLTMEGAKVASN-----SVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSIN 115
           +RL   G    S        R LVL PTRELA QVHESF+VY ++L   +  ++GGV +N
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120

Query: 116 PQMMALRKGIDVLVATPGRLLDLYRQNAVGFNQLQALVLDEADRMLDLGFADELDQLFSA 175
           PQ+ A+ +G+DVLVA PGRLLDL  Q +V  + ++ LVLDEADRMLD+GF  ++ ++ + 
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 176 LPKKRQTLLFSATFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELF 235
           LP KRQ LLFSATFS+ I  +A +LL +P  +EV+P N   + ++Q +  +    K  L 
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALL 240

Query: 236 LHLLAEKRWGQVLVFVKTRKGVDQLVDELQAAGISSDAIHGDKPQASRLRALERFKAGEV 295
            HL+    W QVLVF +T+ G ++L + L   G+ + AIHG+K Q +R +AL  FKAGEV
Sbjct: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLPAVAIHGNKSQNARTKALADFKAGEV 300

Query: 296 QVLVATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVSADEVDQ 355
           ++LVATD+AARGLDI  LP VVNF+LP V EDYVHRIGRTGRAG +GEA+SLV+ DE   
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 356 LAAIETLINQVLPRHDELGFVPDHRVPTTTLGGQ--------IIKKPKKPKKPKDAGGKG 407
           L +IE +  Q +   D +GF        +T+  +         ++ P+  + P+  G  G
Sbjct: 361 LKSIERMTKQKIADGDLMGF------DASTIEAEKPEVRERPDVRNPRNARGPRGDGPNG 414

Query: 408 KIHLGNWFDESEKPNAKPIRKVPSLGGGKPAKKR 441
               G   D+ +    +      +  G +PA+++
Sbjct: 415 SGGGGGRKDKGKDKGKEKSASNSNGRGERPAREQ 448