Pairwise Alignments

Query, 441 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

Subject, 428 a.a., ATP-dependent helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  283 bits (725), Expect = 6e-81
 Identities = 167/375 (44%), Positives = 230/375 (61%), Gaps = 8/375 (2%)

Query: 1   MTFASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60
           M+F+SL L   L++ L      +P+ +Q   IPA+L G+D+ A A TG+GKT  + LPLL
Sbjct: 23  MSFSSLALSADLIQALPKA-ITEPSAIQTLVIPAMLTGKDVFALANTGSGKTLAYGLPLL 81

Query: 61  QRLTMEGAKVASNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMA 120
           +RL        S   +ALVLVPTRELA QV E     G  L L T  + GGV    Q  A
Sbjct: 82  ERLK------TSPEQQALVLVPTRELAMQVSEVLTHVGTALGLNTLCLCGGVDKTEQQNA 135

Query: 121 LRKGIDVLVATPGRLLDLYRQNAVGFNQLQALVLDEADRMLDLGFADELDQLFSALPKKR 180
           L +  ++LVAT GRL DL  Q+ +  N++  LVLDEADR+LD+GF  ++  L S     R
Sbjct: 136 LAENPNILVATTGRLFDL-TQSGLRLNRVTTLVLDEADRLLDMGFWPQVQALASQTAGVR 194

Query: 181 QTLLFSATFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLHLLA 240
           QT++ SATFS+ ++  A++L+R P  V  +P N+  + V++ L  V+K  K++  + LL 
Sbjct: 195 QTVMCSATFSDDLKLKAQQLMRAPTQVSANPENSINQAVQETLYLVNKGSKTQALVALLK 254

Query: 241 EKRWGQVLVFVKTRKGVDQLVDELQAAGISSDAIHGDKPQASRLRALERFKAGEVQVLVA 300
           + +W QVLVF+  ++  D L  +L  AGI +  +HGDK Q+ R  AL  FK G  QVL+A
Sbjct: 255 QHQWPQVLVFIGAKENADSLTKKLNKAGIVATVLHGDKSQSEREAALAEFKNGTTQVLIA 314

Query: 301 TDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVSADEVDQLAAIE 360
           TD+ ARG+ I  LP V+NF+LP+ AE YVHR+GRT RAG  G A+SLV   E+D L A  
Sbjct: 315 TDLLARGIHIELLPVVINFELPMHAETYVHRVGRTARAGQHGIALSLVCHGEMDALNATR 374

Query: 361 TLINQVLPRHDELGF 375
           TL  + LP  +  GF
Sbjct: 375 TLTQRELPVQNLEGF 389