Pairwise Alignments

Query, 441 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

Subject, 422 a.a., DEAD/DEAH box helicase from Vibrio cholerae E7946 ATCC 55056

 Score =  390 bits (1003), Expect = e-113
 Identities = 207/379 (54%), Positives = 269/379 (70%), Gaps = 2/379 (0%)

Query: 1   MTFASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60
           +TF+ LGL   LL TL  L    PTP+Q +AIP VL+G+D++A AQTGTGKTA F LPL+
Sbjct: 6   ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65

Query: 61  QRLTMEGAKVASNS--VRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQM 118
           QR   +  +  +NS  +RALVLVPTRELA+QV +S + Y +   L+  AVYGG S+  Q+
Sbjct: 66  QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125

Query: 119 MALRKGIDVLVATPGRLLDLYRQNAVGFNQLQALVLDEADRMLDLGFADELDQLFSALPK 178
             LR G+D+L+ATPGRLLD     ++   +++ LVLDEADRMLD+GF  +L ++   L  
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185

Query: 179 KRQTLLFSATFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLHL 238
            RQTL FSATF   I+ +A  ++RDP+ V+V+P N+ A+TV+Q + PVDKKRK EL  +L
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKRELLSYL 245

Query: 239 LAEKRWGQVLVFVKTRKGVDQLVDELQAAGISSDAIHGDKPQASRLRALERFKAGEVQVL 298
           +  K W QVLVF KTR+G D L +EL+  GI + +I+GDK Q +R +AL+ FKAG+V+ L
Sbjct: 246 IGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKVRAL 305

Query: 299 VATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVSADEVDQLAA 358
           +ATDVAARGLDI  L QVVN+D+P  AEDYVHRIGRTGRAG  G AVSL+S DE  QL A
Sbjct: 306 IATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQPQLEA 365

Query: 359 IETLINQVLPRHDELGFVP 377
           IE L+N  LP+    GF P
Sbjct: 366 IERLLNTRLPQEWLKGFEP 384