Pairwise Alignments

Query, 441 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

Subject, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

 Score =  454 bits (1169), Expect = e-132
 Identities = 229/408 (56%), Positives = 307/408 (75%), Gaps = 2/408 (0%)

Query: 1   MTFASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60
           M F SLGL  P+L+ +E   Y  P+P+Q++AIPAVL G+D+MAAAQTGTGKTAGF LP+L
Sbjct: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60

Query: 61  QRLTMEGAKVASNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMA 120
           + L  +G KV +N VRAL+L PTRELA Q+ ++  +YG++LPL++  V+GGV INPQM  
Sbjct: 61  ELLA-KGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQR 119

Query: 121 LRKGIDVLVATPGRLLDLYRQNAVGFNQLQALVLDEADRMLDLGFADELDQLFSALPKKR 180
           + KG D+LVATPGRL+DLY QNAV F+QL+ LVLDEADRMLD+GF  ++ ++   LP+KR
Sbjct: 120 MCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKR 179

Query: 181 QTLLFSATFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLHLLA 240
           Q LLFSATFS  IR++A+ L+ +P+ + VSP N+ A+TV+Q + P D K+K ++ + L+ 
Sbjct: 180 QNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVK 239

Query: 241 EKRWGQVLVFVKTRKGVDQLVDELQAAGISSDAIHGDKPQASRLRALERFKAGEVQVLVA 300
           E  W QVLVF++T+ G ++L   L   G+++ AIHG+K Q +R RAL  FKAGEV++LVA
Sbjct: 240 EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVA 299

Query: 301 TDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVSADEVDQLAAIE 360
           TD+AARG+DI  LPQVVNF+LP +AEDYVHRIGRTGRAG  G+A+SLVSA E  +L AIE
Sbjct: 300 TDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIE 359

Query: 361 TLINQVLPRHDELGFVPDHRVPTTTLGGQIIKKPKKPKKPKDAGGKGK 408
            L   +LPR +  GF P +++P + L  + + KPKKPKKPK   G G+
Sbjct: 360 RLTQALLPRVNLAGFEPTNQLPESKLDTRPL-KPKKPKKPKKVEGAGE 406