Pairwise Alignments

Query, 441 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

Subject, 503 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  322 bits (824), Expect = 2e-92
 Identities = 183/406 (45%), Positives = 253/406 (62%), Gaps = 6/406 (1%)

Query: 2   TFASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLLQ 61
           TF  LGL + ++ TL    + KPTP+Q +AIP VLK  DL+  AQTGTGKTA F LP+++
Sbjct: 3   TFKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIE 62

Query: 62  RLTMEGAKVASNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMAL 121
           +L  +G +    ++RALVL PTREL  Q+  + +++ +  PL+   V GGVSIN Q   L
Sbjct: 63  KLVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQL 122

Query: 122 RKGIDVLVATPGRLLDLYRQNAVGFNQLQALVLDEADRMLDLGFADELDQLFSALPKKRQ 181
            +G+D+LVATPGRLLDL  + AV   Q + LVLDEAD+MLDLGF  +L ++   +PK RQ
Sbjct: 123 ARGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQ 182

Query: 182 TLLFSATFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWL--VPVDKKRKSELFLHLL 239
           TLLFSAT  + I ++A E L DP+ VEVSP   AA  V+Q++  VP  K  K+ +    L
Sbjct: 183 TLLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVP-GKDLKTTILKQTL 241

Query: 240 AEKRWGQVLVFVKTRKGVDQLVDELQAAGISSDAIHGDKPQASRLRALERFKAGEVQVLV 299
                G  L+F +T+ G ++L+  L   G  + +IHG+K Q  R RAL+ F+ GE++VLV
Sbjct: 242 TANPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLV 301

Query: 300 ATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVSADEVDQLAAI 359
           ATDVAARG+DI  +  V N+DLP V + YVHRIGRT R G  G A++  + DE+  L  I
Sbjct: 302 ATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDI 361

Query: 360 ETLIN-QVLPRHDELGFVPDHRVPTTTLGGQIIKKPKKPKKPKDAG 404
           E L+  Q+     E     D   P+   GG+   +P+   +P+  G
Sbjct: 362 EKLMGIQIAVASGEA--PADQARPSKGRGGRGNGQPRGNGQPRGNG 405