Pairwise Alignments

Query, 441 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

Subject, 799 a.a., DEAD/DEAH box helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  325 bits (833), Expect = 3e-93
 Identities = 177/412 (42%), Positives = 250/412 (60%), Gaps = 9/412 (2%)

Query: 1   MTFASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60
           MTFA LGL    LR +E + Y  PTP+Q++AIP V  GRD++  AQTGTGKTA F LP++
Sbjct: 1   MTFADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMI 60

Query: 61  QRLTMEGAKVASNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMMA 120
             L    AK  +   R+L+L PTRELA QV E+F +YG+   L    + GG S+N Q   
Sbjct: 61  DILASGKAK--ARMPRSLILAPTRELATQVSENFTLYGKYQKLSMALLIGGESMNEQQKV 118

Query: 121 LRKGIDVLVATPGRLLDLYRQNAVGFNQLQALVLDEADRMLDLGFADELDQLFSALPKKR 180
           L +G+DVL+ATPGRL+DL+ + ++    ++ LV+DEADRMLD+GF  +++++ + LPK R
Sbjct: 119 LDRGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLPKIR 178

Query: 181 QTLLFSATFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLHLLA 240
           QTL FSAT  + IR++A   L +P  V + P    A+TV+Q L+ V    K E    LL 
Sbjct: 179 QTLFFSATMDKEIRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASEKREALRQLLR 238

Query: 241 EKRWGQVLVFVKTRKGVDQLVDELQAAGISSDAIHGDKPQASRLRALERFKAGEVQVLVA 300
            +      +F   ++ VD L   L   G    A+HGD PQ  R   LE+FK  EVQ++V 
Sbjct: 239 RETVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMVC 298

Query: 301 TDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVSADEVDQLAAIE 360
           +DVAARG+D+ ++  V NFD+P   EDY+HRIGRTGRAG  G A +L + ++   L AIE
Sbjct: 299 SDVAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAKYLRAIE 358

Query: 361 TLINQVLPRHDELGFVPDHRVPTTTLGGQIIKKPKKPKKPKDAGGKGKIHLG 412
            L+ + +P   +L  + D  V    L   + +  ++PK+    GGKG+   G
Sbjct: 359 NLLGKTIPPDPQLE-LSDVAVEDVALA--VAEDDRRPKR----GGKGRPERG 403