Pairwise Alignments

Query, 441 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

Subject, 409 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  382 bits (982), Expect = e-111
 Identities = 199/379 (52%), Positives = 264/379 (69%), Gaps = 1/379 (0%)

Query: 1   MTFASLGLIDPLLRTLETLDYRKPTPVQIEAIPAVLKGRDLMAAAQTGTGKTAGFALPLL 60
           M+F++L L   L+ TL  L Y++PTP+QIEAIPA+L  +D+MA AQTGTGKTA FALP+L
Sbjct: 1   MSFSALSLHSQLVNTLAELGYQQPTPIQIEAIPAILAKQDVMAGAQTGTGKTAAFALPIL 60

Query: 61  QRLTMEG-AKVASNSVRALVLVPTRELAEQVHESFRVYGQNLPLRTYAVYGGVSINPQMM 119
           Q+L ++  ++ A   VRALVLVPTRELA QV +SF  Y +   +R    YGGVSI  Q  
Sbjct: 61  QQLLIDNESQDAPKDVRALVLVPTRELAVQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120

Query: 120 ALRKGIDVLVATPGRLLDLYRQNAVGFNQLQALVLDEADRMLDLGFADELDQLFSALPKK 179
             + GIDVL+ATPGRLLD  RQ A+   +L  LV DEADRMLD+GF DE+  +   +P +
Sbjct: 121 EFKAGIDVLIATPGRLLDHLRQGALNLKRLSVLVFDEADRMLDMGFMDEIKAVLKQVPAQ 180

Query: 180 RQTLLFSATFSEAIRQMARELLRDPLSVEVSPRNAAAKTVKQWLVPVDKKRKSELFLHLL 239
           RQTLLFSAT  ++I   ++ LLRDP  +EV+ RN  A  V+Q +  +D  RK+E   HL+
Sbjct: 181 RQTLLFSATLDDSIFGFSKNLLRDPKLIEVAKRNTTAAQVEQRVYAIDSDRKTEFVSHLV 240

Query: 240 AEKRWGQVLVFVKTRKGVDQLVDELQAAGISSDAIHGDKPQASRLRALERFKAGEVQVLV 299
             K W QVL+F +T++GVD+L  +L   G+++ A HGD  Q +R + L+ FK G VQVLV
Sbjct: 241 RSKNWQQVLIFSRTKQGVDKLTTQLNQLGVATQAFHGDLSQGAREKVLKDFKQGLVQVLV 300

Query: 300 ATDVAARGLDIHDLPQVVNFDLPIVAEDYVHRIGRTGRAGATGEAVSLVSADEVDQLAAI 359
           ATDVAARGLDI DL  V+NF+LP +AEDY+HRIGRTGRAG+ G A++L S ++   L  +
Sbjct: 301 ATDVAARGLDIADLQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEV 360

Query: 360 ETLINQVLPRHDELGFVPD 378
           E L+++ LP+    GF PD
Sbjct: 361 EALLDKRLPQQWYPGFEPD 379