Pairwise Alignments

Query, 288 a.a., ABC-type amino acid transport/signal transduction systems, periplasmic component/domain from Pseudomonas stutzeri RCH2

Subject, 274 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 73.6 bits (179), Expect = 5e-18
 Identities = 65/225 (28%), Positives = 99/225 (44%), Gaps = 22/225 (9%)

Query: 50  LLLASASLPAE--VLRLAGNLWPPYTDRSLPGEGLSVELIRTALGRGGYQVEYIEVPWER 107
           LL A +S  AE  ++R+A   WPP+    LP  G   E+I  A  + GYQVE+  +PW R
Sbjct: 45  LLYAQSSPNAEDKLVRIASGEWPPFIGSDLPNYGFVGEIITQAFTKQGYQVEFQFLPWAR 104

Query: 108 ALLGLRKGSYDLVNGW--PAVKRVD--YSL--SSRAFLINRMRWVQRRGSGIRYDGLDSL 161
           A    ++G YD    W   A + +D  YSL  S   F+     +         +  L  L
Sbjct: 105 AYAETQRGLYDATAIWMHSAEREIDFFYSLPVSQEEFV-----FFYPVKKPFDWKTLSDL 159

Query: 162 TGYLLVLSRGYTYSDELDA------DTRLQKGYAANFVQAATMVLAGRADLTLEDERTAL 215
             Y L     Y+Y  ELDA       T  + G AA  ++    +  GR DL  E++    
Sbjct: 160 APYKLGGVLAYSYGKELDALLDSGVLTMERDGLAAKNLE---KLAKGRVDLVPEEKHIGY 216

Query: 216 FHFERELGHERDALAFVPGEFRRVELSLLVRRDHPRATDIIATFN 260
           +   +++ H +D +   P  F      LL  +   R+ +++  FN
Sbjct: 217 YLINQQIPHLQDLITHHPTPFLTNSNYLLFPKQSARSQELLGVFN 261