Pairwise Alignments

Query, 288 a.a., ABC-type amino acid transport/signal transduction systems, periplasmic component/domain from Pseudomonas stutzeri RCH2

Subject, 264 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score = 52.4 bits (124), Expect = 1e-11
 Identities = 55/237 (23%), Positives = 92/237 (38%), Gaps = 5/237 (2%)

Query: 46  LGLILLLASASLPAEV---LRLAGNLWPPYTDRSLPGEGLSVELIRTALGRGGYQVEYIE 102
           + L+L L   S P      L L    +PP+    LP +G    +++ A  R GY      
Sbjct: 9   ISLVLQLLGLSTPCMAGRELTLVATNYPPFYTNELPDQGGVALVVKEAFKRRGYNASVKF 68

Query: 103 VPWERALLGLRKGSYDLVNG-WPAVKRVDYSLSSRAFLINRMRWVQRRGSGIRYDGLDSL 161
            P+ RA L ++ G  D + G W   +R  ++  S      ++ + +R+ + + +  L  L
Sbjct: 69  YPFARAALLVKTGQADGIIGLWYRKEREQWAHYSDPIQAVQIVFYKRKDNPLSFSQLTEL 128

Query: 162 TGYLLVLSRGYTYSDELDADTRLQKGYAANFVQAATMVLAGRADLTLEDERTALFHFERE 221
             + + + RGY    E+ A   L      +       +   R DL L     A +  ++ 
Sbjct: 129 KPFTIGIGRGYANPPEI-AGAGLTTEEGNSDEMNLKKLFLKRIDLVLIGHNLAEYLIKQH 187

Query: 222 LGHERDALAFVPGEFRRVELSLLVRRDHPRATDIIATFNREIAAMLADGSYAAIFVR 278
                DA   V          L V         ++A FN+ + +M  DG  AAI  R
Sbjct: 188 GDEYTDAFEQVGEPIATEVFHLGVSLAVSDQITLVAEFNKGLESMKKDGRLAAILSR 244