Pairwise Alignments

Query, 375 a.a., 16S RNA G1207 methylase RsmC from Pseudomonas stutzeri RCH2

Subject, 340 a.a., 16S rRNA methyltransferase from Vibrio cholerae E7946 ATCC 55056

 Score = 84.3 bits (207), Expect = 4e-21
 Identities = 74/272 (27%), Positives = 119/272 (43%), Gaps = 16/272 (5%)

Query: 110 DLVLIRVPKTLALLEEQLIRLHGQLSPGAQVIAAAMIKHLPRAAGDLLEQYIGAVQASLA 169
           DL+L+  PK     E  L  L  +L  G +++     +   ++   +   Y G +    +
Sbjct: 78  DLILLYWPKAKQEAEYLLAMLLAKLGTGTEIVVVGENRSGVKSIEKMFAAY-GPIHKYDS 136

Query: 170 VKKARLLSATASEKPAPQS--PYPTRYRLDQPKLELLNHA--NLFCREGLDIGTRAFLPH 225
            ++           PA      +   Y +D    EL   +   +F     D+G+R  L  
Sbjct: 137 ARRCSFYWGHCVHTPAAFDIEQWFKSYAVDYQGHELTIRSLPGVFSHGEFDLGSRLLLDT 196

Query: 226 LPQALGALRVADLGCGNGVLGIVYALGNPQAELTLVDESYMAVQSARENWQA--ILGE-R 282
           LP   G  +V D+G G GVLG V A  NP  EL + D S +A++S++E   A  + G   
Sbjct: 197 LPPLSG--KVIDIGSGAGVLGCVMAKLNPHIELEMTDISALAIRSSQETLVANQLHGHVY 254

Query: 283 PADIRAGDGLAEQAPGSLDLVLCNPPFHQQQVVGDFLAWRMFTQAKAALAKGGELWIVGN 342
           P+D+ +  G         + ++ NPPFH           R+  ++   LA GG +W+V N
Sbjct: 255 PSDMFSDTG------HHYNYIVTNPPFHSGLETSYSATERLLAESVDHLASGGSIWVVAN 308

Query: 343 RHLGYHLKLKRLFGNAEQVAATPKFVIIKATR 374
             L Y   L++ FG+ +  A T KF I  A +
Sbjct: 309 SFLKYPPILEQAFGHCDIAAKTNKFAIYHAKK 340