Pairwise Alignments

Query, 736 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

Subject, 830 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  343 bits (881), Expect = 2e-98
 Identities = 211/562 (37%), Positives = 315/562 (56%), Gaps = 15/562 (2%)

Query: 169 LEDSEARLTRALRGSEDGIWEWDVERDQLHLSERWTAMLGM-PMQAGYCSRGWFERVHPD 227
           L+DSE R   A+  S  GIW+W++E + + LS+RW  MLG  P         W  R+HP+
Sbjct: 260 LKDSEQRWLFAVEVSRYGIWDWNLEDNSVFLSDRWKDMLGYGPEDLVPELATWESRLHPE 319

Query: 228 DLPGLREAIAAHLNGHSPSLAHEYRVRMETGEYLWVLVRGVA-ERCEQGT-LRMAGSQTD 285
           D  G+ + + A+LNG +      +R+R + G Y+WVL RG+  E  E+G  LRM G+ +D
Sbjct: 320 DKEGILKNLNAYLNGETEEFESVHRLRHQQGHYIWVLDRGMTVEWNEKGKPLRMIGTLSD 379

Query: 286 ISARKAAEECLRHAARHDALTGLANRLHLDELLKEVQQRPYGRAAALLFIDLDRFKLIND 345
           ++     ++   H A+HD LT LANR  L + L + QQ   G   AL  +DLD FK++ND
Sbjct: 380 VTEDIRNQKAAMHQAKHDPLTDLANRRALMDALYQ-QQDESGSCTALFMLDLDNFKVVND 438

Query: 346 SLGHGAGDQVLVEVAQRLLHCLRPGDHLARFGGDEFVALLGDL-----ACEADAERVAQR 400
           +LGH  GD++L+++A RL         +AR   DEFV L+  L       +  A+ +A +
Sbjct: 439 ALGHHGGDRLLIQIAARLSSYFSSNSLIARVAADEFVVLVKKLPEDLLGAQRRAQALASQ 498

Query: 401 MLVALREPLQLGERTLSVSASIGIAPLQRDGQAL--NVLQAADLALYRAKSAGKDQFALF 458
           M   +     +   T ++SAS+GIA +           L+  ++AL +AK +G+D   ++
Sbjct: 499 MRQLIARSFHISGHTFNLSASVGIAIIDPSETIPPEQQLKRVNMALAQAKESGRDACVVY 558

Query: 459 CDGLHSKAARQLELESALAQALTRREFTLHYQPICRVEQGQPYLLGVEALLRWRF-EDKP 517
              +  +AA+ L + + L  A+TR + +L YQP+   + G+  +  VEALLRW   +   
Sbjct: 559 SSEMDKRAAQNLMIRTELVHAVTRHQLSLFYQPLLNAK-GE--IASVEALLRWHHPQHGA 615

Query: 518 VAPMEFIPVLEESREIVRVGEWVLREACRQVRRWQQAGQTQLYCAVNLSIRQLQQVDFAE 577
           ++P +FIPV E S  IV +GEWVL EACR +R  Q+ G      ++N+S RQ  Q +FA 
Sbjct: 616 ISPADFIPVAEGSALIVELGEWVLLEACRFIRGLQEQGIRPPMVSINVSARQFHQDEFAP 675

Query: 578 LLARVLRETGLPPQSLLLEITETLLMHDSEMMLNCLHEVAALGVRLALDDFGTGYCSLGY 637
            L  +L++ G+ P  + LE+TE +L+ D + +   + ++   GV +A+DDFGTGY SL Y
Sbjct: 676 KLLVMLKDQGISPAHIELELTEHVLLTDLQQVRQTMTQLREAGVSIAVDDFGTGYSSLSY 735

Query: 638 LKRYPLHVLKVDRSFIAAAPDDADSVAISGAIIGLGQSLGLAVVAEGVERPEQIEFLVAQ 697
           L+  PL+ LK+D SFI    +   S +I  A+I +  SL L  VAEGVE   Q E L A 
Sbjct: 736 LQELPLNRLKLDASFIRDMGNGDASASIVKAMIDMSHSLNLEFVAEGVEIQSQFEQLKAY 795

Query: 698 GCRAVQGYWFSPPRPAPELQAL 719
            C   QGY F  P P  EL  L
Sbjct: 796 RCDLYQGYLFHRPMPGEELARL 817