Pairwise Alignments

Query, 736 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

Subject, 1251 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  346 bits (888), Expect = 4e-99
 Identities = 199/439 (45%), Positives = 276/439 (62%), Gaps = 13/439 (2%)

Query: 289  RKAAEECLRHAARHDALTGLANR-LHLDELLKEVQQRPYGRAA--ALLFIDLDRFKLIND 345
            RK  EE L H A HD LTGL NR L LD + + +Q+R    +   A+L +DLDRFK IND
Sbjct: 762  RKQGEEMLTHLALHDPLTGLPNRALLLDRIERAIQRRRRNDSYRFAVLMLDLDRFKFIND 821

Query: 346  SLGHGAGDQVLVEVAQRLLHCLRPGDHLARFGGDEFVALLGDLACEADAERVAQRMLVAL 405
            S GH  GD +LVEVA+R+   +R GD +AR GGDEF  LL D+       ++ +R+L AL
Sbjct: 822  SHGHTTGDNLLVEVARRMRPVVRAGDTVARLGGDEFALLLEDVDSPRRIVQITRRLLAAL 881

Query: 406  REPLQLGERTLSVSASIGIAPLQRDGQ--ALNVLQAADLALYRAKSAGKDQFALFCDGLH 463
              P+++G + +  SASIG+  L+  G   A  +L+ AD+A+Y+AK+ GK +F +F   +H
Sbjct: 882  ERPVRMGAKVVRTSASIGMV-LRTQGYDTADALLRDADIAMYQAKAQGKGRFRVFNQSMH 940

Query: 464  SKAARQLELESALAQALTRREFTLHYQPICRVEQGQPYLLGVEALLRWRFEDK-PVAPME 522
                  + LE  L+ A+ R++  L YQP+  V+  +  LLG EAL+RWR   +  V P  
Sbjct: 941  RHTMEMMTLEGDLSMAMRRKQLYLEYQPVLAVDGAR--LLGFEALVRWRHPTEGAVPPAR 998

Query: 523  FIPVLEESREIVRVGEWVLREACRQVRRWQQA--GQTQLYCAVNLSIRQLQQVDFAELLA 580
            FIP+ EE+  I+R+G+WVL +A   + RW+    G   LY +VNLS RQ  Q +    +A
Sbjct: 999  FIPMAEETGLILRIGQWVLEQAAATLARWRATLPGAHDLYVSVNLSARQASQPNLTGRVA 1058

Query: 581  RVLRETGLPPQSLLLEITETLLMHDSEMMLNCLHEVAALGVRLALDDFGTGYCSLGYLKR 640
            R+L +TGLPP++L LEITET +M D +  L  L  +  LGV + +DDFGTGY SL YL+R
Sbjct: 1059 RILSDTGLPPEALKLEITETAIMKDPDGALQRLEALRRLGVGIGIDDFGTGYSSLAYLQR 1118

Query: 641  YPLHVLKVDRSFIAAAPDDADSVAISGAIIGLGQSLGLAVVAEGVERPEQIEFLVAQGCR 700
            +P+  LKVDRSF++A   DA++  I   ++ LG+SLGL VVAEGVE  EQ   +   GC 
Sbjct: 1119 FPVDTLKVDRSFVSAVAGDAENREIVRTVVTLGRSLGLHVVAEGVETAEQFAIVAELGCH 1178

Query: 701  AVQGYWFSPPRPAPELQAL 719
            +VQGY FS  RP  E +A+
Sbjct: 1179 SVQGYHFS--RPVAEERAV 1195



 Score = 69.3 bits (168), Expect = 1e-15
 Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 1/130 (0%)

Query: 165 QRHALEDSEARLTRALRGSEDGIWEWDVERDQLHLSERWTAMLGMPMQAGYCSRGWFERV 224
           Q   LE S  R   A+  + DGIWEW+++ + L+ S R   +LG    A          +
Sbjct: 477 QMRELEKSRQRYDMAISATNDGIWEWELDTNTLYHSPRCLEILGRAPDATLSPMAIAAIL 536

Query: 225 HPDDLPGLREAIAAHLNGHSPSLAHEYRVRMETGEYLWVLVRGVAERCEQGTL-RMAGSQ 283
           HP+D   +   +       +    HE+R+R   G + WVL RG A R   G L R+AG+ 
Sbjct: 537 HPEDRLRVLTEVRRITGEDAERFEHEFRIRHTDGTWRWVLARGAARRGPGGRLNRVAGAL 596

Query: 284 TDISARKAAE 293
            DI+  K  +
Sbjct: 597 ADITDHKQGD 606