Pairwise Alignments

Query, 736 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

Subject, 1076 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  358 bits (919), Expect = e-103
 Identities = 223/568 (39%), Positives = 318/568 (55%), Gaps = 19/568 (3%)

Query: 168  ALEDSEARLTRALRGSEDGIWEWDVERDQLHLSERWTAMLG----MPMQAGYCSRGWFER 223
            AL  +EAR       + +GI++   E   L ++     +LG      +  G  S G  + 
Sbjct: 501  ALRRAEARFRGIFEHALEGIFQSTPEGRFLSVNPAMARILGYEGVQELLEGVESIG--DG 558

Query: 224  VHPDDLPGLREAIAAHLNGHSPSLAHEYRVRMETGEYLWVLVRGVAERCEQG-TLRMAGS 282
            V+ D  P  R+   A +  H    A E+R R + G+ +W+ V         G T+   G 
Sbjct: 559  VYAD--PARRDEFVARMEEHGQVNAFEFRGRRKGGDLIWLSVNARRVPGADGATMYYEGF 616

Query: 283  QTDISARKAAEECLRHAARHDALTGLANRLHLDELLKEVQQRPYGR---AAALLFIDLDR 339
              D++    + E L H A HD LTGL NR+   + L+   +R   R     A+L++DLDR
Sbjct: 617  LEDVTMGHESRERLEHQAFHDPLTGLPNRVLFHDRLQMALKRAARRRNYTFAMLYLDLDR 676

Query: 340  FKLINDSLGHGAGDQVLVEVAQRLLHCLRPGDHLARFGGDEFVALLGDLACEADAERVAQ 399
            FK+INDSLGH  GD +L  V+ +L  C+R  D +ARFGGDEF  LL +      A RVA+
Sbjct: 677  FKVINDSLGHDVGDALLKVVSAKLRECVRDVDTVARFGGDEFGVLLEETPTRGTAVRVAR 736

Query: 400  RMLVALREPLQLGERTLSVSASIGIAPLQRDGQAL--NVLQAADLALYRAKSAGKDQFAL 457
            R+   L EP+++G   +  +ASIGI  L+ D  +    +++ AD A+YRAK  G+ +F +
Sbjct: 737  RIRAHLAEPVRIGPHEVFTTASIGIV-LRTDQYSTPEELVRDADTAMYRAKEQGQSRFKV 795

Query: 458  FCDGLHSKAARQLELESALAQALTRREFTLHYQPICRVEQGQPYLLGVEALLRW-RFEDK 516
            F   +  +A R L +E+ L +A+ R+E  LHYQP+  +E G   L GVEALLRW R E  
Sbjct: 796  FNKRMREEALRLLTIETDLRRAVERQEMRLHYQPVVALEDGG--LHGVEALLRWTRTEGG 853

Query: 517  PVAPMEFIPVLEESREIVRVGEWVLREACRQVRRWQQAGQTQLYCA-VNLSIRQLQQVDF 575
             ++P EF+PV E++  I  +G + L E C Q+RRW +AG        VN+S RQ  Q   
Sbjct: 854  DISPAEFVPVAEDTGLITSIGAFALEEVCLQLRRWNEAGLPPPGVVHVNISGRQFMQPGL 913

Query: 576  AELLARVLRETGLPPQSLLLEITETLLMHDSEMMLNCLHEVAALGVRLALDDFGTGYCSL 635
               +  +L  TG  P+SL  E+TE++LM      +  + ++  LG+RL LDDFGTGY SL
Sbjct: 914  PHAVEMLLERTGTDPRSLRFEVTESVLMRHGSQAITVMAQLRDLGIRLCLDDFGTGYSSL 973

Query: 636  GYLKRYPLHVLKVDRSFIAAAPDDADSVAISGAIIGLGQSLGLAVVAEGVERPEQIEFLV 695
            GYLKR P+  +K+DRSF+A    D D  AI  +I+ LG  LGL +VAEGVE P Q E L 
Sbjct: 974  GYLKRLPVDSIKIDRSFVAGLEHDRDGQAIVRSIVSLGLHLGLEIVAEGVETPTQAEMLA 1033

Query: 696  AQGCRAVQGYWFSPPRPAPELQALFDGT 723
            + GCR  QG+ ++PP  A +L A+ D T
Sbjct: 1034 SLGCRYAQGFLYAPPVSADDLAAMLDAT 1061