Pairwise Alignments

Query, 281 a.a., Transposase and inactivated derivatives from Pseudomonas stutzeri RCH2

Subject, 269 a.a., ISSod1, transposase OrfB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  170 bits (430), Expect = 4e-47
 Identities = 96/260 (36%), Positives = 144/260 (55%), Gaps = 1/260 (0%)

Query: 12  LQVHPSGYYAWLAEPKSAREKEDQRLLGLIKHAWLESGGVYGYRKIHDDLRELGESCGRH 71
           + V  SGYY W   P +    E  +L  L++  + +S G  G R++   LR+ G   GR+
Sbjct: 1   MSVSKSGYYDWHKRPANVISVETLKLYRLVRQLFKQSRGSLGNREMVKKLRKEGYQVGRY 60

Query: 72  RVARLMRVEGLRSQTGYRRRPGYYGGKPTVASPNRLERQFKVSEPNKVWVTDITYIRTYE 131
            V ++M    L++      +           + N L   F     N+VW  D+TY++T E
Sbjct: 61  LVRKIMHRLRLKATQRCAYKVTTQRKHSDAVADNLLNMNFNPVSANQVWAGDVTYLKTGE 120

Query: 132 GWLYLAVVLDLFSRQVIGWSMKPRMCSDLAIDALLMAVWRRKPRQEVMIHSDQGSQFSSS 191
           GW+YLAVV+DL+SR+++GW +  RM +DL   AL+ A   R+P + ++ HSD+GSQ++S 
Sbjct: 121 GWMYLAVVMDLYSRRIVGWRIDKRMTTDLISKALIKAYNLRQPARGLVFHSDRGSQYTSK 180

Query: 192 DWQSFLKANNLISSMSRRGNCHDNAVAESFFQLLKRERIRRKTYGTREEARSDVFDYIEM 251
            +   L +  + +SM   G C DNAV E FF  LK + I +    TRE  + DV  YI+ 
Sbjct: 181 QFGRLLSSYGIRASMGDVGACWDNAVVERFFGSLKHDWIFKVAQPTREFMKQDVTAYIK- 239

Query: 252 FYNPKRRHSSAMQLSPVEFE 271
           +YN +R HS+   LSPVEFE
Sbjct: 240 YYNLERLHSANNDLSPVEFE 259