Pairwise Alignments

Query, 442 a.a., Restriction endonuclease S subunits from Pseudomonas stutzeri RCH2

Subject, 464 a.a., restriction endonuclease subunit S from Synechocystis sp000284455 PCC 6803

 Score =  152 bits (384), Expect = 2e-41
 Identities = 113/443 (25%), Positives = 207/443 (46%), Gaps = 21/443 (4%)

Query: 5   VKWPCKFPDRWTVLPSKRLFPESKERAPESDEQLSATQEYGVISQAEFMRLAGRRVVQLN 64
           V W  + P  W + P      E KE+     E    +  YG I      +L G     + 
Sbjct: 14  VSWLGQIPAHWDIKPGFAFLSERKEKNTGMKESTVLSLSYGQIVVKPPEKLHGL----VP 69

Query: 65  QNLELRKRVEIGDFVISMRSFQGG-----LERAWAEGGIRSSYVVLRPRADLVPGYYQRL 119
           ++ E  +  E G+ +I     Q       + +    G I S+Y+ L  +    P Y   L
Sbjct: 70  ESFETYQIAEPGNIIIRGTDLQNDKVSLRVGKVRNRGIITSAYLCLETKEKFNPDYAHLL 129

Query: 120 FKSVDYIQTLQSTANFIRDGQDMNYQNFVLIDLPLPPVSEQLCIAAFLDHETARIDALIE 179
               D ++      + +R  Q++++ +F  + L  PP SEQ  I  +L     +I+  I 
Sbjct: 130 LHGYDLMKIYYGMGSGLR--QNLSFSDFKRLPLLAPPESEQSKINKYLQSIQVQINKFIR 187

Query: 180 EQQRLIELLMEKRQAVISHAVTKGLDPTVPMKDSGVEWLGKVPAHWSVVPFGLAFGYQEG 239
            ++RLIELL E++Q +I+ AVT+GLDP V +K SGV+W+G +P +WS +        + G
Sbjct: 188 NKRRLIELLKEQKQNIINQAVTRGLDPNVKLKPSGVKWIGDIPEYWSFLKLKRIACVKTG 247

Query: 240 PGIMAVDFRDEGVPLVRISGVQ-GRWVTLQGCNYLDPAKASGKWGHFRLEHGDLIIS-GS 297
               +  ++  G+PL+RI  ++    V ++    L  +  +  +  F++++GDL+++   
Sbjct: 248 YAFKSDHYKSVGIPLIRIGDLKHSGLVDIKQAVKLQESDLT-HFSCFKIQYGDLLMAMTG 306

Query: 298 ASMGLVSEVGEEAVGAVAYTGLIRLTPKTGISDRDFIRSVVGSYQFFVQIDLLKAGSTIQ 357
           A++G V++  +    A+    +           +D++  ++ S  +  Q+ +   G    
Sbjct: 307 ATIGKVAKY-QHQTEALLNQRVCSFRSFESKCFQDYLLFILSSEVYLKQVTIFCYGGAQP 365

Query: 358 HFGPTHLSQMKVVLPPLDEQIKLASYVDKVSVQFDQLLGEAEKTNELLQERRAALISAAV 417
           +   + L   K+ +PP+ EQ  + SYV + +   D  +  AE+  EL+QE    L+S  V
Sbjct: 366 NISDSTLMSFKIPVPPISEQQAILSYVQEQTKTTDSAVSRAEREIELIQEYYTRLMSDVV 425

Query: 418 TGKIDVSGWQPPASVPSPELAQE 440
           TG++DV        +  PE+ +E
Sbjct: 426 TGQVDV------RDIEVPEITEE 442



 Score = 58.5 bits (140), Expect = 4e-13
 Identities = 60/239 (25%), Positives = 106/239 (44%), Gaps = 28/239 (11%)

Query: 204 LDPTVPMKDSGVEWLGKVPAHWSVVPFGLAFGYQEGPGIMAVDFRDEGVPLVRISGVQGR 263
           L P    KDSGV WLG++PAHW + P G AF       +     ++ G+    +  +   
Sbjct: 3   LKPYPEYKDSGVSWLGQIPAHWDIKP-GFAF-------LSERKEKNTGMKESTVLSLSYG 54

Query: 264 WVTLQGCNYLDPAKASGKWGHFRLEHGDLIISGSASMGLVSEVGEEAVGAVAYTGLIR-- 321
            + ++    L          +   E G++II G+    L ++     VG V   G+I   
Sbjct: 55  QIVVKPPEKLHGLVPESFETYQIAEPGNIIIRGT---DLQNDKVSLRVGKVRNRGIITSA 111

Query: 322 ---LTPKTGISDRDFIRSVVGSYQFFVQIDLLK----AGSTI-QHFGPTHLSQMKVVLPP 373
              L  K   +  D+   ++  Y      DL+K     GS + Q+   +   ++ ++ PP
Sbjct: 112 YLCLETKEKFNP-DYAHLLLHGY------DLMKIYYGMGSGLRQNLSFSDFKRLPLLAPP 164

Query: 374 LDEQIKLASYVDKVSVQFDQLLGEAEKTNELLQERRAALISAAVTGKIDVSGWQPPASV 432
             EQ K+  Y+  + VQ ++ +    +  ELL+E++  +I+ AVT  +D +    P+ V
Sbjct: 165 ESEQSKINKYLQSIQVQINKFIRNKRRLIELLKEQKQNIINQAVTRGLDPNVKLKPSGV 223