Pairwise Alignments

Query, 442 a.a., Restriction endonuclease S subunits from Pseudomonas stutzeri RCH2

Subject, 439 a.a., type I restriction-modification system, S subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 70.5 bits (171), Expect = 1e-16
 Identities = 91/393 (23%), Positives = 169/393 (43%), Gaps = 61/393 (15%)

Query: 61  VQLNQNLELRKRVEIGDFVISMRSFQGGLERAWAEGGIRSSYVV-----LRPRADLVPGY 115
           V+LN NL+ + ++ I D +I M     G   A+ +     + +V     LR +++L   Y
Sbjct: 70  VELN-NLK-KYQLAINDILIGMDGSLVGKNYAYLKQSDLPALLVQRVARLRAKSNLHSKY 127

Query: 116 YQRLFKS---VDYIQTLQSTANF--IRDGQDMNYQNFVLIDLPLPPVSEQLCIAAFLDHE 170
              ++ +   +DY++ +++ +    I +G   N++       P PP+ EQ  IAA L   
Sbjct: 128 LYYMYATDFWLDYVEVVKTNSGIPHISNGDIKNFR------FPFPPLPEQQKIAAIL--- 178

Query: 171 TARIDALIEEQQRLIELLMEKRQAVISHAVTKGLD--------PTVPMKDSGVEWLGKVP 222
              +D +IE+ Q  I+ L + +  ++   +TKG+         P +  KDS V   GK+P
Sbjct: 179 -TSVDEVIEKTQAQIDKLKDLKSGMMQELLTKGVGIKQGDKYVPHIEFKDSPV---GKIP 234

Query: 223 AHWSVVPFGLAFGYQEGPGIMAVDFRDEGVP--------LVRISGVQGRWVTLQGCNYLD 274
             W V P            +  +D   +  P        +VR S V+   + L    Y  
Sbjct: 235 KSWEVKPLNSVV-------LKIIDCEHKTAPYVDKSEYLVVRTSNVRHGELVLDDMKYTH 287

Query: 275 PAKASGKWGHFRLEH-GDLIISGSASMG---LVSEVGEEAVGAVAYTGLIRLTPKTGISD 330
            A    +W +  +   GD++ +  A  G   LV E  +  +G      ++ L P   +  
Sbjct: 288 -ADGYAEWTNRAIPSLGDVLFTREAPAGESCLVPENTKVCMGQ----RMVLLRPDANVIF 342

Query: 331 RDFIRSVVGSYQFFVQIDLLKAGSTIQHFGPTHLSQMKVVLPPLDEQIKLASYVDKVSVQ 390
            +F    + S      I     G+T+       + ++  ++PPL EQ +++  +  V   
Sbjct: 343 SNFFSLFLTSEAASCAIYERSIGTTVSRINIEDIKRIPCIVPPLSEQQEISKAIQSVQ-- 400

Query: 391 FDQLLGEAEKTNELLQERRAALISAAVTGKIDV 423
            + +L + EK  + L+  + AL+   +TGK+ V
Sbjct: 401 -NSILNKQEKL-QSLKNLKKALMQDLLTGKVRV 431



 Score = 33.1 bits (74), Expect = 2e-05
 Identities = 47/215 (21%), Positives = 87/215 (40%), Gaps = 11/215 (5%)

Query: 210 MKDSGVEWLGKVPAHWSVVPFGLAFGYQEGPGIMAVDFRDE--GVPLVR-ISGVQG--RW 264
           M  S +   GK+P  W          +  GP   +  F  E  G  LVR I+  QG  RW
Sbjct: 1   MSHSILSPFGKIPNDWEYQIIIDNVEFLTGPAFDSSLFNTESRGARLVRGINLTQGSTRW 60

Query: 265 VTLQGCNYLDPAKASGKWGHFRLEHGDLIIS--GSASMGLVSEVGEEAVGAVAYTGLIRL 322
                  Y D    + K   ++L   D++I   GS      + + +  + A+    + RL
Sbjct: 61  GE-DKTKYWDVELNNLK--KYQLAINDILIGMDGSLVGKNYAYLKQSDLPALLVQRVARL 117

Query: 323 TPKTGISDRDFIRSVVGSYQFFVQIDLLKAGSTIQHFGPTHLSQMKVVLPPLDEQIKLAS 382
             K+ +  + ++  +  +  +   ++++K  S I H     +   +   PPL EQ K+A+
Sbjct: 118 RAKSNLHSK-YLYYMYATDFWLDYVEVVKTNSGIPHISNGDIKNFRFPFPPLPEQQKIAA 176

Query: 383 YVDKVSVQFDQLLGEAEKTNELLQERRAALISAAV 417
            +  V    ++   + +K  +L       L++  V
Sbjct: 177 ILTSVDEVIEKTQAQIDKLKDLKSGMMQELLTKGV 211