Pairwise Alignments

Query, 457 a.a., putative efflux protein, MATE family from Pseudomonas stutzeri RCH2

Subject, 454 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

 Score =  360 bits (923), Expect = e-104
 Identities = 200/446 (44%), Positives = 281/446 (63%), Gaps = 5/446 (1%)

Query: 1   MSSMLAAWRDAPTHSKVWALAAPMILSNLSVPLVALVDSSVIGHLPHAHQLGAVAVGGSL 60
           +S +L   +    H +V A+A PM+LSN++VPL+ LVD++VIGHL HA  LG VA+G ++
Sbjct: 4   VSLILQTLKQPNVHRQVLAIALPMVLSNITVPLLGLVDAAVIGHLEHAWYLGGVALGSTM 63

Query: 61  YTLLVWVMGFLRMGTTGFAAQAAGRNDGGALRQILLQGLLLALGFALLLGAIGVPLKGAA 120
            ++  W++GFLRM TTG  AQA G  +   L ++LLQG ++ALG A L      P+    
Sbjct: 64  ISVTFWLLGFLRMSTTGLTAQAHGAQNSQQLARVLLQGSVIALGLAALFLLFHRPVAELI 123

Query: 121 LQLMQPSAELDELTRDYFHTRLFGLPAALASYALIGWFLGTQNARAPLAILLTTNLINVV 180
                 S+E+      YF+ R +  PAAL ++ L+GW LGTQNARAP+ +++ TNL N+V
Sbjct: 124 FHFSDASSEVKTYAEAYFYIRAWSAPAALLNFVLLGWLLGTQNARAPMWMVIITNLTNIV 183

Query: 181 LDLWFVLGLDWGVAGAARASVIAEWSGALLGLALTRKALARY--PGRLD-TRALRRWLSW 237
           LDL  VLGL   V GAA ASVIA+++G L GL    +   ++  P       +L + LS 
Sbjct: 184 LDLLLVLGLGLKVEGAAIASVIADYAGLLFGLLCVGRYWRQHQLPAPFSFIPSLTKELS- 242

Query: 238 RPLMAVNRDIFLRSLALQLVFLLVTVQGTRLGDATVAANALLLNGLLLTAHALDGLAHAV 297
             L+A+NRDIFLRSL LQ VF  +T QG  LGD  VAANA+L++ L++ ++ +DG A+A+
Sbjct: 243 -RLVALNRDIFLRSLCLQAVFSFMTFQGAALGDDIVAANAVLMSFLMMISYGMDGFAYAM 301

Query: 298 EALAGHAIGARNRDALQRVMVVAGGWSLLASVAFGLFFLLGGQLFIQLQTDIPEVRQTAL 357
           EA+ G AIGA++   L+  M+ +  W+ +  +   L FL  G   IQ+ T+IP V+ TA 
Sbjct: 302 EAMVGKAIGAKDDRQLRTAMISSTFWATMICLLLSLIFLGFGSDLIQMITNIPSVQATAE 361

Query: 358 TYLPYLAALPLIAVWSYLLDGLFIGATRAREMRNSMLLAVGLTLPLGWLLQGLGNHGLWL 417
            YLP+L A+PLIAVW +LLDG+FIGAT+ +EMRNSM ++      +   +   GNH LWL
Sbjct: 362 HYLPWLVAMPLIAVWCFLLDGVFIGATKGKEMRNSMAVSAVAFFAIYGFMTHYGNHALWL 421

Query: 418 AFLSFMLMRGVCLGVLAQRLQRRGAW 443
           A LSFM +RG  LG       R G +
Sbjct: 422 AMLSFMALRGFTLGATFYTQWRAGTF 447