Pairwise Alignments

Query, 249 a.a., Methyltransferase domain. from Pseudomonas stutzeri RCH2

Subject, 260 a.a., tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM from Vibrio cholerae E7946 ATCC 55056

 Score =  142 bits (359), Expect = 5e-39
 Identities = 91/255 (35%), Positives = 135/255 (52%), Gaps = 19/255 (7%)

Query: 3   DRHFDELATRFAEKIYGGAKGAIRLAVLQADLTEILPPR-----PLRVLDIGAGLGHMSL 57
           DR+FD++A +FA+ IYG  KG IR  ++  DL ++L        PL VLD G GL  +S 
Sbjct: 4   DRNFDDIAHKFAKNIYGSDKGEIRQVIVWEDLEQLLSQLDTQKVPLHVLDAGGGLAQVSQ 63

Query: 58  WLAQQGHDVTLAEPAEPMLDGARKQFAAAG--QQATFIQAPWQDVENHVEGRFDLVICHA 115
            +A+ GH VTL + +  ML  A +  A  G  +Q  F+ +P Q ++ H++   DLV+ HA
Sbjct: 64  KIARLGHRVTLCDLSSEMLQLAEQDIANNGLLEQYRFVHSPVQTIQAHLDAPVDLVLFHA 123

Query: 116 VLEWLAEPQAILPVLHRLVAEDGWLSLAFYNRDALIYRNLLKGHFKKLRSQSYAGERQSL 175
           V+EWLAEP+  L  L   V   G +S+ FYN   L+Y+N + G+   +       +R  L
Sbjct: 124 VMEWLAEPKPALQNLLAQVRPGGMVSVMFYNYHGLVYKNAVCGNIPHVLEDMPHRKRFKL 183

Query: 176 TPQQPLDPRELAAQLAPYWRVESS------SGVRVFHDYM-PADFQARTEPAELIEMELA 228
            PQ+ L P E+       W  ESS      SG+R F DY+         +  +L+ +E  
Sbjct: 184 QPQKGLLPEEVY-----QWIEESSFEICGKSGIRCFSDYIGNMKNMGEYQYEDLVALERK 238

Query: 229 YRRHPTFSGLGRYLH 243
           + R   +  LGRY+H
Sbjct: 239 FCRQEPYLSLGRYIH 253