Pairwise Alignments

Query, 385 a.a., Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain from Pseudomonas stutzeri RCH2

Subject, 352 a.a., outer membrane-stress sensor serine endopeptidase DegS from Vibrio cholerae E7946 ATCC 55056

 Score =  255 bits (651), Expect = 2e-72
 Identities = 157/379 (41%), Positives = 216/379 (56%), Gaps = 41/379 (10%)

Query: 5   LRFLGWPLLVGLLVALLIIQRYPQL------VGIKERDIGLRQAPLVATTPQQGPYSYAN 58
           L+F    + +GLL A+ II   P L      V  + R+IG  Q             S+  
Sbjct: 2   LKFWVRSISLGLLAAIAIIMVTPSLRAKLMPVVEQPRNIGALQI------------SFNE 49

Query: 59  AVAGAAPAVANLYTTKVIEKTEQQAPLSKDPLFQRFFNDNLPRQRRMESSLGSAVIMSPE 118
           AV  AAPAV N+Y  K  E                  ND   R++     LGS VI+S +
Sbjct: 50  AVRKAAPAVVNIYNRKYSE------------------ND---RRKLSIQGLGSGVIVSEK 88

Query: 119 GYLLTNNHVTANAEQIVVALKDGRETLARVIGSDPETDLAVLKIDLADLPAITVGHSDRI 178
           GY++TN HV A A+QIVVAL+DGR   A+++G D  TD+AVL+++   LP I +      
Sbjct: 89  GYIITNYHVVAQADQIVVALQDGRAAAAQLVGKDRRTDIAVLRVEGTGLPVIPLNPDYHP 148

Query: 179 RVGDVTLAIGNPFGVGQTVTMGIISATGRNQLGLNTYEDFIQTDAAINRGNSGGALVDAE 238
           +VGDV LAIGNP+ +GQT T GIISATGR+ +  +  + FIQTDAAIN GNSGGALV+ +
Sbjct: 149 KVGDVVLAIGNPYNLGQTTTFGIISATGRSSISADGRQAFIQTDAAINDGNSGGALVNTQ 208

Query: 239 GNLIGINTAIISESGG--SQGIGFAIPVKLALEVMKSIIDHGQVIRGWLGVEVQSLTQEL 296
           G L+GINTA   ++    + GI FAIP  LA ++M  II  G+VIRG++GV+ Q +    
Sbjct: 209 GELVGINTASFQQATDLETYGISFAIPYSLASKIMTKIIADGRVIRGYIGVDGQDINSMT 268

Query: 297 AESFGQEGRPGIVVAGVYRDGPAARAGLQPGDLILSIDGVQSADGRSSMNQVARARPGDK 356
           +   G E   GI++ GV  +GPAARAG    D++L IDG +    ++  + V   RPG  
Sbjct: 269 SRLLGNEHVGGIIILGVDPNGPAARAGFLEQDILLKIDGKKINGRQNVTDTVTDLRPGTV 328

Query: 357 IDIDILRNGKPLTLTAEVG 375
           +D  +LR G+ + L   +G
Sbjct: 329 VDFTLLRKGEEIVLPVTIG 347