Pairwise Alignments

Query, 487 a.a., UDP-N-acetylmuramyl-tripeptide synthetase from Pseudomonas stutzeri RCH2

Subject, 512 a.a., UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase from Vibrio cholerae E7946 ATCC 55056

 Score =  371 bits (952), Expect = e-107
 Identities = 207/472 (43%), Positives = 287/472 (60%), Gaps = 9/472 (1%)

Query: 16  VLIRELTLDSRKVRGGDLFLAVPGLQFDGRDHAQDAIARGAAAVAYEAE-----GLVQPL 70
           ++I  L LDSR ++ GD F+A+ G   DGR     AIA+GA  V  EA+     G V+  
Sbjct: 42  LVITHLELDSRLIKSGDTFVAIQGHAVDGRQFIDKAIAQGANLVLAEADAQHLNGWVEYR 101

Query: 71  VGEAVMVPVQHLASQLSAIAGRFYGEPSRNMRLVGVTGTNGKTSVSQLIAQALDRLGEPC 130
            G  V+  +  L   LS +AGR YG    + +L+GVTGTNGKT+++QLIAQ L+ LG   
Sbjct: 102 AGVPVIY-LAELGQHLSELAGRLYG--GHHNQLIGVTGTNGKTTITQLIAQWLELLGHKA 158

Query: 131 GIIGTLGTGFHGQLELGRHTTPDAIGVQATLANLKQEGARAVAMEVSSHGLDQGRVAALD 190
            ++GT G GF   LE   +TT +A+ +QATL +L + GA+  A+E SSHGL QGRV  L 
Sbjct: 159 AVMGTTGNGFLNALEPAANTTGNALQIQATLRDLAERGAQYTALETSSHGLVQGRVKKLH 218

Query: 191 FDVAVFTNLSRDHLDYHGTMEAYGAAKARLFNVPGLRCRVINLDDGFGRALAGEDRESRL 250
           F   VF+NLSRDHLDYHGTMEAY AAK  LF+    +  +IN+DD  G     +  ++  
Sbjct: 219 FVAGVFSNLSRDHLDYHGTMEAYAAAKFSLFSEHACQNAIINVDDAVGAQWVKQLPQAIG 278

Query: 251 ITYSLEDPSAY-LYCAEARLDDDGIHARLITPQGERSMRSPLLGRFNVSNVLAAVGALLG 309
           ++   +  +A  ++  E    + GI     +  GE  + +PL+G FN  N+L A+  LL 
Sbjct: 279 VSLVTKPNTAQAIWAREVAYAESGITLNFESSWGEGELHAPLIGEFNACNLLLALATLLS 338

Query: 310 MDYALDEILAVLPELEGPAGRMQRLGGGDHPLIVVDYAHTPDALEKVLTALRPHARGRLL 369
           + +    +LA  P+L    GRM+         +VVDYAHTPDALEK L ALR H  G+L 
Sbjct: 339 LGFEKSALLATAPKLRPVLGRMELFQREQKAKMVVDYAHTPDALEKALRALRVHCAGQLW 398

Query: 370 CLFGCGGDRDTGKRPLMAEVAERLADGIVVTDDNPRNEAPERIVEDIRSGFVNPAAATFA 429
            + GCGGDRD GKRP+MA +AE+ AD +++TDDNPR+E+P+ IV D+ +G   P  A   
Sbjct: 399 AIVGCGGDRDRGKRPMMAAIAEQFADRVILTDDNPRSESPQAIVADMVAGLTYPERAHIE 458

Query: 430 HGRAQAIAGLIATAHAEDVVVLAGKGHEDYQEIRGERLPFSDIEEACKALSI 481
           H R QA +  +  A A+D+++LAGKGHEDYQ +  E + +SD E A + L +
Sbjct: 459 HHRFQAASYALQHAGAQDIILLAGKGHEDYQVLANETIHYSDRETAQQLLEL 510