Pairwise Alignments

Query, 253 a.a., Predicted membrane protein from Pseudomonas stutzeri RCH2

Subject, 253 a.a., ABC transporter permease from Methanococcus maripaludis S2

 Score = 85.9 bits (211), Expect = 7e-22
 Identities = 63/243 (25%), Positives = 117/243 (48%), Gaps = 14/243 (5%)

Query: 5   AIRAIYLFELARTWRT---LLQSIATPVISTSLYFVVFGSAIG--ARMEAMHGIPYGAFI 59
           A  A++  +L R  R    ++ S+  P++    + + +  A    A  E   G+ Y  ++
Sbjct: 3   AFSAMFYRQLRRFTRAKSRVIGSLLNPLVWLVFFGIGWSRAFDFPAAREIFGGVDYLTYL 62

Query: 60  IPGLIMMALLSESISNASFGIYMPRYSGTIYEVLSAPVSYVEIVIGYVGAAATKSLVLGV 119
           IPG++ M + S S  +    I+  ++ G + E L AP S  E ++G +   +  +L+ GV
Sbjct: 63  IPGVVSMTVFSGSFISGVTVIWDKQF-GFLKETLVAPTSRSEAILGRIMGDSITALIQGV 121

Query: 120 IILITARLFVDYQIQHPLMMALFLVLTAITFCLFGFIIGIWADGWEKLQIVPALIVTPLA 179
           +I++ +   V       + +     + A+ F   G  +G+  +  E   ++  L++ PL 
Sbjct: 122 LIMVLSLFLVSLNPFGMIPVIFTSFILAVAFASVGISLGLKINSQEGFHLIFGLLMQPLI 181

Query: 180 FLGGSFYSIEMLPPLWQKITLF-NPVVYLISGFRWSFYGVS------DISVGISLAMILG 232
           FL G+FY I+ + P W KI  + NP+ Y +   R+   G S      D+S+ I L++ L 
Sbjct: 182 FLSGAFYPIDAM-PTWMKILAYINPLTYAVDSARYFLAGFSRFPIMLDVSILIVLSVFLV 240

Query: 233 FLA 235
            LA
Sbjct: 241 VLA 243