Pairwise Alignments

Query, 1239 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 1160 a.a., Signal transduction histidine kinase from Pseudomonas fluorescens FW300-N2E2

 Score =  353 bits (906), Expect = e-101
 Identities = 257/818 (31%), Positives = 420/818 (51%), Gaps = 64/818 (7%)

Query: 459  LQARKRDEERFRNVVEASPNAFVLVDVHGDIVMVNRQTEVLFGYTRQELLGQPVEQLLPE 518
            L A   D++R   V+E     F+      DI M+    E++ G     +      Q L E
Sbjct: 346  LVAPTSDDDRINGVIELG---FLRPLTERDIEML----ELISGNIGTSIEAARYRQRLQE 398

Query: 519  ALREAHRGLRQGYTEHPEPRRMGSNRELFGLHRDGSALPVEIGLSPLRSGDEQLVQ---A 575
             L E  +   +   +  E +      E        S   +E     L   +EQL +   A
Sbjct: 399  VLAETQQLNEELQVQQEELKTANEELEEQSRILKESQAHLEAQQQELEQTNEQLAEQRDA 458

Query: 576  VIIDISHRKAAERRLREQADQLAVANRYKSEFLANMSHELRTPLNSILILSDQLRQNGAG 635
            +    S    A+ +L+E+A++L  +++YKSEFLANMSHELRTPLNS LILS  L +N   
Sbjct: 459  MDQKNSELNLAQIQLQERAEELQRSSKYKSEFLANMSHELRTPLNSSLILSKLLSENPQQ 518

Query: 636  NLNEKQVRHADIIHRAGHELLQLINDVLDLAKIESGHMQLKLEPLNLREMLTEQQTSLGP 695
            NL+E+QV+ A+ I+ AG++LL LIND+LD++K+E+G ++++ E  +++ ++   +    P
Sbjct: 519  NLSEEQVKFAESIYSAGNDLLNLINDILDISKVEAGKLEVRPENTSVQRLVEGLRDMFEP 578

Query: 696  MAEQKGLLLKIEVDADVPVTLNSDRARLQQILRNLLTNALKFTEQGEVELLASCRSAEDG 755
            +A  KGL  +++V  D P  L +DR RL+Q+++NLL+NA+KFTEQG V L     + + G
Sbjct: 579  LAVDKGLEFEVQVLPDAPAMLYTDRQRLEQVIKNLLSNAVKFTEQGTVSLSV---AGQPG 635

Query: 756  SGQTLQLQVRDSGIGIAKDQHERIFQAFQQIDGSISRHYGGTGLGLAITRQLVEVLGGQV 815
            SG  +   VRDSGIGIA DQ + IF+AF+Q DG+ +R YGGTGLGL+I+R L  +LGG +
Sbjct: 636  SG--IAFMVRDSGIGIAADQQQSIFEAFRQADGTTNRRYGGTGLGLSISRDLATLLGGSI 693

Query: 816  TVESELGQGATFTVVL-------------PIATVSGASTQALLPPQ-------------- 848
            +V SE GQG+ FT+V+             P+  +  A+  A   P+              
Sbjct: 694  SVSSEPGQGSVFTLVMPERYVEPGESPIEPLTFIPTATAPAPAAPKAAPAPLIAEVDTPI 753

Query: 849  ---PQRRGRGP----GLLIIEDDTDFASVVAEVGQSHGFTSLICNTGEQGLEALRREHFA 901
                  R + P     +L+IED+  FA ++ ++    G+  L+ +  ++G +   +    
Sbjct: 754  ARFADDRDKAPFDTRCILVIEDEPKFARILFDLAHELGYQCLVAHGADEGFDLALQLAPD 813

Query: 902  AVILDILLPDISGWQIHRELRGDERHQGMPVIIISCVPQPH-DWHDDGSRYLVKPVAQSE 960
            A++LD+ LPD SG  + + L+     + +PV +IS   +     H     Y VKP  + E
Sbjct: 814  AILLDMRLPDHSGLTVLQRLKERAETRHIPVHVISVEDRVEAAMHMGAIGYAVKPTTREE 873

Query: 961  LERIFIEL-ARHEHNPLRLLLVEAEPRRRVLIRDYFERLGYSVTLAGSSDSARLAYAEQT 1019
            L+ +F  L A+      R+LLVE +  +R  I          +T  G +  A        
Sbjct: 874  LKDVFARLEAKLTQKVKRVLLVEDDDLQRDSITRLIGDDDIEITAVGLAQQALDLLRTNV 933

Query: 1020 FSVVVVDSELADGSGLDLLDAFERLRSLEGVTVLVNSREPLSEKDLQRLHRYAATVL--- 1076
            +  +++D +L D  G DLL             V+V +   L+  +   L +Y+ +++   
Sbjct: 934  YDCMIIDLKLPDMLGNDLLKRMSSEDICSFPPVIVYTGRNLTRDEEAELRKYSRSIIIKG 993

Query: 1077 --SKEEAVERLGALVRPEPAAPAPSAAVSLHLAA------PGQRVLLVDEDVRLIYSLTA 1128
              S E  ++ +   +    +  +      L  A        G++VLLVD+DVR I++LT+
Sbjct: 994  ARSPERLLDEVTLFLHKVESRLSHERQRMLKTARSRDKVFEGRKVLLVDDDVRNIFALTS 1053

Query: 1129 QLDELGIQVVPATSAAEALERFDE-DAFDLVVLDMSRPGAEGPELARRLKQDHDC-QAPI 1186
             L+  G  VV   +  EA++R +E D  DLV++D+  P  +G E    +++D    + PI
Sbjct: 1054 ALEAKGAIVVIGRNGLEAIDRLNEFDDIDLVLMDVMMPEMDGFEATALIRKDPRWRKLPI 1113

Query: 1187 VALVGANDEGARERCSASGADEVLIKPVEATALRELLR 1224
            +A+     +  +ERC A+G+++ L KP++   L  L+R
Sbjct: 1114 IAVTAKAMKDDQERCLAAGSNDYLAKPIDLDRLFSLIR 1151