Pairwise Alignments
Query, 1239 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2
Subject, 1331 a.a., hybrid sensor histidine kinase/response regulator from Vibrio cholerae E7946 ATCC 55056
Score = 222 bits (566), Expect = 1e-61
Identities = 172/622 (27%), Positives = 304/622 (48%), Gaps = 36/622 (5%)
Query: 470 RNVVEASPNAFVLVDVHGDIVMVNRQTEVLFGYTRQELLGQPVEQLLPEALREAHRGLRQ 529
+ +++A+PN + G + VN + L G E++ + +++ P + E Q
Sbjct: 475 QEILDATPNPMYCLSADGKFLTVNAKFLDLMGLYNNEVIDKEPQEIFPAEVAERFAAAHQ 534
Query: 530 GYTEHPEPRRMG-SNRELFGLHRDGSALPVEIGLSPLRSGDEQLVQAVIIDISHRKAAER 588
T+ + S + G+ R+ L E S R+ + +++D++ RK E
Sbjct: 535 VLTQQQSSQNYEVSLVDYTGVQRE--MLVYEASFSD-RADKVNGIVGILLDMTERKEMED 591
Query: 589 RLREQADQLAVANRYKSEFLANMSHELRTPLNSILILSDQLRQNGAGNLNEKQVRHADII 648
LR+ + ++ K +FLANMSHE+RTP+N+IL ++ L N L+ Q ++ I
Sbjct: 592 ELRKAKEAADAMSQAKGDFLANMSHEIRTPMNAILGMA-HLALNTP--LDTTQRKYVTRI 648
Query: 649 HRAGHELLQLINDVLDLAKIESGHMQLKLEPLNLREMLTEQQTSLGPMAEQKGLLLKIEV 708
+ + LL +IND+LD +K+E+G + ++ NL ++L + A++KG+ +++
Sbjct: 649 NESAKNLLGIINDILDFSKMEAGKLNVERIDFNLDDVLDNVTAVVSLKAQEKGIEFLMDI 708
Query: 709 DADVPVTLNSDRARLQQILRNLLTNALKFTEQGEVELLASCRSAEDGSGQTLQLQVRDSG 768
D +P+ L D RL Q++ NL NA+KFT QGE+ L A + TL+ V+D+G
Sbjct: 709 DPHIPLGLIGDPLRLGQVMVNLCGNAVKFTSQGEIVLSARVSQLNEQQ-VTLRFAVKDTG 767
Query: 769 IGIAKDQHERIFQAFQQIDGSISRHYGGTGLGLAITRQLVEVLGGQVTVESELGQGATFT 828
IGIA+D+ + +F AF Q D SI+R YGGTGLGL+I++QLVE++GGQ+TV SE G+G+TF
Sbjct: 768 IGIAQDKLDDLFDAFSQADNSITRQYGGTGLGLSISKQLVELMGGQITVHSEEGKGSTF- 826
Query: 829 VVLPIATVSGASTQALLPPQPQRRGRGPGLLIIEDDTDFA-SVVAEVGQSHGFTSLICNT 887
+ V G + G +++ DD D A ++ + + F + +
Sbjct: 827 ---EFSVVCGLQDAKMRDISQPVHGLADKRVLVVDDNDSARHILDSLLTAMRFNVVTVSN 883
Query: 888 GEQGLEALRREHFAAVILDILLPDISGWQIHRELRGDERHQGMPVIIISCVPQPHDWHDD 947
G + L ++++ F + +D +P ++G ++ ++ M +++ + + +
Sbjct: 884 GFEALSEIQQKPFDMLFVDWNMPGMNGIELLTRVKTLGLRGHMKSFLVTAYGREINLDGE 943
Query: 948 GSR----YLVKPVAQSEL-----ERIFIELARHEHNPLR-----------LLLVEAEPRR 987
S+ +VKPV S L IE RH+ N LLLVE
Sbjct: 944 NSKLVDALIVKPVNPSNLLDAIVTSYGIEHVRHKTNEAHHNSRPNFAGQSLLLVEDNEVN 1003
Query: 988 RVLIRDYFERLGYSVTLAGSSDSARLAYAEQTFSVVVVDSELADGSGL---DLLDAFERL 1044
+ + + G +V +A A F +V++D ++ G+ + + A R
Sbjct: 1004 QEVALGLLQDTGLNVVVANHGQEALERLEHADFDLVLMDMQMPVMDGITATEHIRANPRW 1063
Query: 1045 RSLEGVTVLVNSREPLSEKDLQ 1066
SL V + N+ E+ LQ
Sbjct: 1064 HSLPIVAMTANAMAIDIERCLQ 1085
Score = 58.9 bits (141), Expect = 3e-12
Identities = 60/261 (22%), Positives = 109/261 (41%), Gaps = 10/261 (3%)
Query: 977 RLLLVEAEPRRRVLIRDYFERLGYSVTLAGSSDSARLAYAEQTFSVVVVDSELADGSGLD 1036
R+L+V+ R ++ + ++V + A ++ F ++ VD + +G++
Sbjct: 853 RVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGIE 912
Query: 1037 LLDAFERLR---SLEGVTVLVNSREPLSEKDLQRLHRYAATVLSKEEAVERLGALVRPEP 1093
LL + L ++ V RE + + +L A ++ L A+V
Sbjct: 913 LLTRVKTLGLRGHMKSFLVTAYGREINLDGENSKL--VDALIVKPVNPSNLLDAIVTSYG 970
Query: 1094 AAPAPSAAVSLHLAA----PGQRVLLVDEDVRLIYSLTAQLDELGIQVVPATSAAEALER 1149
H + GQ +LLV+++ L + G+ VV A EALER
Sbjct: 971 IEHVRHKTNEAHHNSRPNFAGQSLLLVEDNEVNQEVALGLLQDTGLNVVVANHGQEALER 1030
Query: 1150 FDEDAFDLVVLDMSRPGAEGPELARRLKQDHDCQA-PIVALVGANDEGARERCSASGADE 1208
+ FDLV++DM P +G ++ + + PIVA+ ERC +G ++
Sbjct: 1031 LEHADFDLVLMDMQMPVMDGITATEHIRANPRWHSLPIVAMTANAMAIDIERCLQAGMND 1090
Query: 1209 VLIKPVEATALRELLRRRLDL 1229
L KP+E ++LR L +
Sbjct: 1091 HLSKPIEVDKFYQVLRHFLQV 1111
Score = 42.0 bits (97), Expect = 4e-07
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 1111 QRVLLVDEDVRLIYSLTAQLDELGIQVVPATSAAEALERFDEDAFDLVVLDMSRPGAEGP 1170
+RVL+VD++ + L + L + VV ++ EAL + FD++ +D + PG G
Sbjct: 852 KRVLVVDDNDSARHILDSLLTAMRFNVVTVSNGFEALSEIQQKPFDMLFVDWNMPGMNGI 911
Query: 1171 ELARRLK 1177
EL R+K
Sbjct: 912 ELLTRVK 918