Pairwise Alignments

Query, 605 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

Subject, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  470 bits (1210), Expect = e-137
 Identities = 273/547 (49%), Positives = 343/547 (62%), Gaps = 68/547 (12%)

Query: 1   MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60
           MSF SLGLS  +  AV   GY  P+P+Q +AIPAVL G+D+M AAQTGTGKT GF LP+L
Sbjct: 1   MSFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  ELLFPGGHPDREHRYGPKQPRVLVLTPTRELAAQVHESFKVYARDLPLKSTCIFGGVGMN 120
           ELL  G       R   KQ R LVLTPTRELAAQ+ ES   Y + LPL+S  +FGGVG++
Sbjct: 61  ELLSQGP------RARSKQVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGIS 114

Query: 121 PQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180
           PQI  + +G+D+LVA PGRLLDL  Q A+  S +E LVLDEADRMLDMGFIHD+KK+LA 
Sbjct: 115 PQISQLKRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAI 174

Query: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRMFRVAASHKRALL 240
           LP KRQNL+FSATFS +I  LA  L++NP  I VTP N+T   ++Q +  V  + K A L
Sbjct: 175 LPPKRQNLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAAL 234

Query: 241 AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQV 300
             LI QG W+QVLVF+RTKHGANRLA++LE  G+ AAAIHGNKSQ ARTKALA+FK+  V
Sbjct: 235 VKLIQQGDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDV 294

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R+LVATDIAARGLDIDQLP VVNF+LPNV EDYVHRIGRTGRAG  G+A+SLV+ +E KL
Sbjct: 295 RVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKL 354

Query: 361 LKGIERMTKQRIPEGDLMGFDASAIEAEKPEVREPRQPRPQRGEGKARGERNKPAEKGAE 420
           L  IER+  + +P  ++ GF             EP    P+            P   G  
Sbjct: 355 LADIERLIGKLLPRAEVEGF-------------EPTHTLPE--------TNLTPKRHGQH 393

Query: 421 QKERNRRSQSKSRKPARDSASGEAQVVARPPQLPPDRAPDEFRDDELDNFGNRVDYVSPY 480
           +  RN + +S S++ +  S++G+            D+A    R D+              
Sbjct: 394 KGPRNPKPKSNSQRSSNRSSNGQRS----------DKAGQPRRGDQAQG----------- 432

Query: 481 QNKQNRGRRPGAPAQPGSAPRAAGAARTGAA-GAGAPAAKGKRPGQAQGARSGQPRNGQP 539
            NK+ +GRR                 RTGA+ G   PA++G++  Q QG +  +  N   
Sbjct: 433 -NKEGQGRR-----------------RTGASTGTSKPASEGQQ-AQNQGKQEHRDGNAPA 473

Query: 540 RRKNESR 546
           RR+   R
Sbjct: 474 RRRRRRR 480