Pairwise Alignments

Query, 605 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

Subject, 562 a.a., RNA helicase from Cupriavidus basilensis FW507-4G11

 Score =  499 bits (1285), Expect = e-145
 Identities = 291/552 (52%), Positives = 356/552 (64%), Gaps = 43/552 (7%)

Query: 1   MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60
           MSF+ LGLS+ L  AV   GYT PTP+Q +AIPA+L+G DL+  AQTGTGKT GF LP+L
Sbjct: 1   MSFSELGLSDKLMRAVAEQGYTTPTPIQAQAIPAILKGGDLLAGAQTGTGKTAGFTLPLL 60

Query: 61  ELLFPGGHPDREHRYGPKQP-RVLVLTPTRELAAQVHESFKVYARDLPLKSTCIFGGVGM 119
           +LL       RE   G + P R LVLTPTRELAAQV ES + Y + L L+S  +FGGVG+
Sbjct: 61  QLLSESS-AGREPARGQRLPVRALVLTPTRELAAQVEESVRNYGKYLKLRSMVMFGGVGI 119

Query: 120 NPQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLA 179
           NPQI+ + +G+D++VA PGRLLD  +Q+ IDL+HVE+LVLDEADRMLDMGFIHD++K+L 
Sbjct: 120 NPQIEQLKRGVDIVVATPGRLLDHLSQRTIDLAHVEMLVLDEADRMLDMGFIHDIRKILN 179

Query: 180 KLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRMFRVAASHKRAL 239
            LP KRQNLLFSATFS +I  LA +LL NP  IEV   NTT E + QR++ V    KR L
Sbjct: 180 VLPPKRQNLLFSATFSDEIRGLADRLLDNPASIEVARRNTTAETVAQRVYPVDRERKREL 239

Query: 240 LAHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQ 299
           LAHL+ +  W QVLVFTRTKHGANRLAE L+K GL A AIHGNKSQ+ART+AL +FKA  
Sbjct: 240 LAHLVRENDWHQVLVFTRTKHGANRLAEQLDKDGLSALAIHGNKSQSARTRALTEFKAGT 299

Query: 300 VRILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEK 359
           +R+LVATDIAARG+DIDQLPHVVN++LPNV EDYVHRIGRTGRAG  GEAISLV  DE  
Sbjct: 300 LRLLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGAEGEAISLVCVDEIS 359

Query: 360 LLKGIERMTKQRIPEGDLMGFDASAIEAEKPEVREPRQPRPQ-RGEGKARGERNKPAEKG 418
           L++ IER+ K++I +  L GF+       +P +++ RQ R Q +G G  RG    PA   
Sbjct: 360 LMRDIERLIKRQIEQTILPGFEVDPSIPAEP-IQKGRQARGQGQGNGGGRGRGQAPA--- 415

Query: 419 AEQKERNRRSQSKSRKPARDSASGEAQVVARPPQLPPDRAPDEFRDDELDNFGNRVDYVS 478
                     Q + R PA D  +GE Q   RP + P  R       D             
Sbjct: 416 --------GGQPRGRAPAAD--AGERQ--QRPARAPQGRGQAPAAAD------------- 450

Query: 479 PYQNKQNRGRRPGAPAQPGSAPRAAGAARTGAAGAGAP---AAKGKRPGQAQGARSGQPR 535
                  +G+R  AP  PG  P A G+ R  +AG G P    A G R G+A G R+    
Sbjct: 451 ------GQGQR-RAPQAPGQRP-AQGSGRPASAGQGNPRNGQANGNRTGEANGNRAAGNG 502

Query: 536 NGQPRRKNESRR 547
           NG         R
Sbjct: 503 NGNGNGNGNGNR 514