Pairwise Alignments

Query, 266 a.a., ABC-type uncharacterized transport system, permease component from Pseudomonas stutzeri RCH2

Subject, 264 a.a., inner membrane protein YpjD from Vibrio cholerae E7946 ATCC 55056

 Score =  155 bits (392), Expect = 8e-43
 Identities = 86/223 (38%), Positives = 127/223 (56%)

Query: 42  LALLAHGISLFIQLLSPSGLHLDFFTASSLIAAAVILLILLALHRMPVENLLLLLFPLGC 101
           +ALL HG  L   +L  SG +L     +SLI+  + L + LA+ +  +  LL + +    
Sbjct: 41  IALLFHGWLLSDLILHSSGQNLSILNVASLISFIISLAMSLAMFKTRLWFLLPVAYSFSA 100

Query: 102 LTVLFAQFAPSGTAPAIAEEPGILAHILLSILAYGMLTIAVFQALLLLLQDHHLKHKHSS 161
           + +  A F P      +  +P +L HI L++ +Y  L+I    AL L   DH LK K   
Sbjct: 101 INLSAATFLPGTFITHLESDPKLLLHISLALFSYSTLSIGALYALQLAWLDHKLKSKKVF 160

Query: 162 GLIRNFPPLQTMESLLFGFLWAGWVLLSASLLSGWLFLDDLFAQHLVHKTLLSVIAWVVF 221
            +  N PPL  +E  LF  +  G +LL+ +LL+G++F+ D+FAQ   HK +LS +AW+V+
Sbjct: 161 SINPNLPPLLLVERQLFKIILIGNLLLTGTLLTGFIFVQDMFAQGKAHKGILSFVAWIVY 220

Query: 222 GLLLWGRQQLGWRGYKAIRWTLAGFCLLMLAYFGSKLVREFIL 264
            +LLWG  + GWRG K   + +AG  LL LAYFGS+ VRE IL
Sbjct: 221 SILLWGHYRKGWRGKKVTWFAVAGATLLTLAYFGSRFVREIIL 263