Pairwise Alignments

Query, 458 a.a., signal recognition particle protein from Pseudomonas stutzeri RCH2

Subject, 450 a.a., signal recognition particle protein Srp54 from Methanococcus maripaludis S2

 Score =  259 bits (662), Expect = 1e-73
 Identities = 155/452 (34%), Positives = 263/452 (58%), Gaps = 11/452 (2%)

Query: 1   MFENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKEFVNRVKERAV 60
           M + L   LS  L  +     + +  +K+ +++++ AL+++DV + +V      ++ +A+
Sbjct: 1   MLDKLGQNLSDALNKLKNATFVDKKLVKEVIKDIQKALIQSDVNVKLVFNMSKEIERKAI 60

Query: 61  GTEVSKSLTPGQAFVKIVRAELEELMGAANEDLALQVTPPAVVLMAGLQGAGKTTTVGKL 120
                K L+  +  VKIV  EL +L+G   + L L  +  +V+L+ G+QG+GKTT+  KL
Sbjct: 61  DEAPPKGLSKKEHIVKIVYDELVKLLGETTQKLELDPSKKSVILLIGIQGSGKTTSAAKL 120

Query: 121 ARFLKERKKKTVLVVSADVYRPAAIKQLETLAAEVGVTFFPSDISQK-PVDIAQAAIREA 179
           AR+++++  +  L ++ADVYRPAA +QL+ L+ ++ V  F  +   K PV+I +  +   
Sbjct: 121 ARYIQKKGLRPGL-IAADVYRPAAYQQLKQLSEKINVPLFGDETRTKTPVEITKEGME-- 177

Query: 180 KLKFIDVVLVDTAGRLAIDAEMMAEIQAVHAAINPAETLFVVDAMTGQDAANTARAFGEA 239
           KLK +DV+++DTAGR   +  ++AE++ +    NP E + V+D   GQ A N A+AF E+
Sbjct: 178 KLKKVDVIIIDTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKES 237

Query: 240 LPLTG-VVLTKVDGDARGGAALSVRHVTGKPIKFLGMGEKSDALEPFHPDRIASRILGMG 298
           +   G +++TK+DG A+GG ALS       PIKF+G GE  D LE F P +  SRILG+G
Sbjct: 238 VSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLG 297

Query: 299 DVLSLIEQAEQTLDREKAEKLTKKLKKGKGFDLEDFRDQLQQMKNMGGLGGLMDKLPSIG 358
           D+ SL+E+ E  +D E  E+    + KGK F L +   QL+ +  MG +  ++  +P +G
Sbjct: 298 DLDSLLEKTEDIMD-ESTEESIDSILKGK-FTLIELYAQLETISKMGPMKQILSMIPGMG 355

Query: 359 GVNLSQMGHAQGAAEKQFKQMEAIINSMTPAERRNPDIISGSRKRRIAMGSGTQVQDIGR 418
           G   +    A    E + K+ + +++SMT  E+ NP++I  SR +RIA G+G + ++I  
Sbjct: 356 G---NMPKEAAQLTEAKLKRYKIMMDSMTMEEKENPELIKTSRLQRIAKGAGVKQEEIKD 412

Query: 419 LIKQHKQMQKMMKKVTGKGGMAKMMRGMGGML 450
           L+K +   +     +  +G M KM   MG ++
Sbjct: 413 LLKYYSTTKNAFGNLK-RGKMPKMGGQMGQIM 443