Pairwise Alignments

Query, 238 a.a., RNA methyltransferase, RsmE family from Pseudomonas stutzeri RCH2

Subject, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Vibrio cholerae E7946 ATCC 55056

 Score =  201 bits (512), Expect = 8e-57
 Identities = 115/241 (47%), Positives = 155/241 (64%), Gaps = 4/241 (1%)

Query: 1   MRLSRFFIDAPL-SLGQHPLPEASAHYIGRVLRLTAGSAVQLFDGSGDEFRGELLEVGKK 59
           MR+ R +   P+  LG   L E +A +IGRVLR+ AG  V LFDG G EF   + EVGKK
Sbjct: 1   MRIPRIYHPEPIHQLGTVALSEDAAGHIGRVLRMQAGQEVLLFDGLGAEFPAVISEVGKK 60

Query: 60  TVTVELHEHLKGMPESALQIHLGQGLSRGERMDWAIQKATELGVAQITPIISERCEVRLN 119
            V V + E ++   ES L +HLGQ +SRG++M++ IQK+ ELGV  ITP++SERC V+L+
Sbjct: 61  QVLVNITERVENSIESPLDLHLGQVISRGDKMEFTIQKSVELGVTTITPLLSERCGVKLD 120

Query: 120 DERADKRLAHWRQIAISACEQCGRSVLPIIHAPVSLRDWLAVEAE-LKLVLHPIAE-PLA 177
           ++R +K++  W++IAISACEQCGR+ +P I   + L  W A   E LKL LHP A+  L 
Sbjct: 121 EKRFEKKIQQWQKIAISACEQCGRNTVPEIRPIMDLEAWCAEPTEALKLNLHPRAKYSLN 180

Query: 178 SHAKP-RTLAFLIGPEGGLSENEVEQAAVQGFLPARLGPRVLRTETAPVVALSVAQQLWG 236
           +   P   +  LIGPEGGLS  E++      F    LGPRVLRTETA + A++  Q  +G
Sbjct: 181 TLPTPVSKVRLLIGPEGGLSAEEIDMTRRYQFEETLLGPRVLRTETAALTAIAALQVRFG 240

Query: 237 D 237
           D
Sbjct: 241 D 241