Pairwise Alignments

Query, 238 a.a., RNA methyltransferase, RsmE family from Pseudomonas stutzeri RCH2

Subject, 265 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Bifidobacterium breve UCC2003

 Score = 90.5 bits (223), Expect = 3e-23
 Identities = 71/243 (29%), Positives = 111/243 (45%), Gaps = 31/243 (12%)

Query: 19  LPEASAHYIGRVLRLTAGSAVQLFDGSGDEFRGELL--EVGKKTVTVELHEHLKGMPESA 76
           LP     +  + +RL AG ++QL DG G      +   E G   V     E     PE  
Sbjct: 30  LPAHIKRHAVQAMRLKAGDSLQLSDGRGLRIHAVMADPEAGLAEVVTVGRE-----PEPL 84

Query: 77  LQIHLGQGLSRGERMDWAIQKATELGVAQITPIISERCEVRLNDERADKRLAHWRQIAIS 136
            ++ L Q L++    + A+  AT++GV Q+ P  ++R   +    R DK+   W  +  +
Sbjct: 85  TRLALIQALAKTGHDEQAVDMATQIGVDQVVPWQADRSIAKWKAGRTDKK---WNAVLDA 141

Query: 137 ACEQCGRSVLPIIHAPVSLRDWLA------VEAELKLVLHP---------------IAEP 175
           A EQ  R+  P + A  + ++ +A      V  +L +VLH                + E 
Sbjct: 142 ATEQARRAYKPQLEACANSKEVVAICRRACVHGDLVIVLHQDATDTWTGVEAKVAQLVER 201

Query: 176 LASHAKPRTLAFLIGPEGGLSENEVEQAAVQGFLPARLGPRVLRTETAPVVALSVAQQLW 235
             S  KPRT++ ++GPEGG+SE EV      G +   LG  +LR  TA  VALS+  +  
Sbjct: 202 TLSDGKPRTVSVVVGPEGGISEQEVADFTKAGAVSCVLGSNILRAATAGPVALSLLSRAL 261

Query: 236 GDF 238
           G +
Sbjct: 262 GRY 264