Pairwise Alignments

Query, 251 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

Subject, 249 a.a., helix-turn-helix transcriptional regulator from Pseudomonas fluorescens SBW25-INTG

 Score =  118 bits (296), Expect = 1e-31
 Identities = 86/245 (35%), Positives = 125/245 (51%), Gaps = 24/245 (9%)

Query: 16  HAHDYHQLVMSLSGRAEFEVNGTGGEVCRMRACLVPGDADHGFAGMGDNRMLIIDLDE-- 73
           H+HD+ QLV  LSG  + EV+G G +V      ++P  A H       +R L++D+    
Sbjct: 17  HSHDHAQLVFGLSGHLDLEVDGRGSQVRESSVMVLPFSAHHACGSRDGSRCLVLDVPTEH 76

Query: 74  ---QDVGTEDPELLARLFEAPRYPALDADFQNLLAYAGAELARYGSDPLLARALGGVLLR 130
              Q +GT   +   RL + P   ALD+    L+ +          DPL+A+  G VLL 
Sbjct: 77  WVLQSLGTH-ADASRRLLDQPARLALDSRQHQLVQWLAQSPV---DDPLIAQQ-GAVLLL 131

Query: 131 ALHLRLFGESLQRPVG-PLDIQRL-----DSHIQDNLARRITVAELAQVVCLSPSHFHAQ 184
           A        SL  P   PL  +RL     ++HI+ +LA  + VA+LA++  LS +  HA+
Sbjct: 132 A--------SLNHPSAQPLPGRRLPYAAFNAHIERHLAHPLQVADLARIADLSVARLHAR 183

Query: 185 FKDCVGLTPHQYLLKTRLDRAARLLRETPLPLVRIAEECGFSSQSALTTATRRYLGLTPR 244
           F    G TP  Y+   RL  A  LLR+TPLP+  IA+  G++SQSA   A  R  G +P 
Sbjct: 184 FMAECGQTPMDYIRSRRLHMALDLLRQTPLPVGEIADRVGYTSQSAFAAAMLREFGASPG 243

Query: 245 GLRKS 249
            LR++
Sbjct: 244 ALRRN 248