Pairwise Alignments

Query, 494 a.a., L-proline:Na+ symporter (from data) from Pseudomonas stutzeri RCH2

Subject, 246 a.a., hypothetical sodium/proline symporter (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  201 bits (511), Expect = 2e-56
 Identities = 109/224 (48%), Positives = 149/224 (66%), Gaps = 12/224 (5%)

Query: 183 VSWTDTVQATLMIFALLITPVFVILALGDMGAAMDTIATQNPAAFDMFSG-LSFVAIISL 241
           +SWTD  QA+LM+ ALLI P F + +  +  A +++I   +PA   + S   + + ++SL
Sbjct: 1   MSWTDFFQASLMLIALLIIP-FAVFSRPESHAGIESI---DPAMLALISDKTTMIGLLSL 56

Query: 242 LAWGLGYFGQPHILVRFMAADSIKTIPNARRIGMAWMILTLAGAVAVGFFGIAYFAGHPE 301
           LAWGLGYFGQPHIL RFMA  ++  +P +RRI M+WMIL+L GA+A G  G  YFA  P 
Sbjct: 57  LAWGLGYFGQPHILSRFMAIGTVDALPTSRRIAMSWMILSLLGALATGLAGSVYFANEP- 115

Query: 302 QAGAVSQNGERVFMELVKILFNPWVAGIILSGVLAAVMSTLSAQLLVSSSALTQDFYKAM 361
                  N E VF  L +  FNPW+ G++++ +L+A+MST+ +QLLV SS +T+DFY+  
Sbjct: 116 -----LANAETVFFHLAQAAFNPWIGGLLIAAILSAIMSTIDSQLLVCSSVITEDFYRKW 170

Query: 362 LRKSASQTELVWVGRGMVLLIALIAIGIASNPESKVLGLVSYAW 405
           LR +    EL+ VGR  VL IA+IA  IA NPE+ VL LVSYAW
Sbjct: 171 LRPT-DDRELMMVGRMGVLAIAVIAGIIALNPENSVLNLVSYAW 213