Pairwise Alignments

Query, 671 a.a., Outer membrane receptor proteins, mostly Fe transport from Pseudomonas stutzeri RCH2

Subject, 713 a.a., ligand-gated channel from Vibrio cholerae E7946 ATCC 55056

 Score = 93.6 bits (231), Expect = 3e-23
 Identities = 144/614 (23%), Positives = 247/614 (40%), Gaps = 106/614 (17%)

Query: 3   LKRHPLAWSISLALVPAAWA---AEPVELQSVVVSASGLAKQSHEMTTPAAVMEGDELVL 59
           +K  P++ ++ L+++ A +A    EP   + VVV+A+ + +   E+    AV+EG+ L  
Sbjct: 1   MKLSPVSAAV-LSVLAAGFAHAETEPSHYEEVVVTANRIEQPLSEVAGSVAVLEGETLEK 59

Query: 60  RREATLGETLETVPGVRSSSFGAGAARP---VIRGLDGARVKVLSDGVELLD---ASTIS 113
           + +  L + L   PGV   S   GA RP    IRG+ G R+ ++ DG++  D   A+ I+
Sbjct: 60  QGKTELYDALNQEPGV---SVTGGAGRPQNITIRGMTGNRIAIVRDGIQSADGYGAADIN 116

Query: 114 PDHAVTSEPLL-AERIEVLKGPATLLYGGGAIGGVVNVIDKKIPTRVPEKGYEGELELRA 172
             +   +  L   ++I+V+KG ++ LYG GAIGGVV +  K     +  + Y  +  L  
Sbjct: 117 DKYGRNTFSLSNVKQIQVVKGASSTLYGSGAIGGVVIIESKAPEDYLYHRDYYVDAALTY 176

Query: 173 NSVAN--EGAGVFGITAGSGNFAVRAEGTKRQADPYEIPGSSNKQEGSYN-DTDSFNLGA 229
           + ++N  +G     +  G G   +         D ++   + N  +  YN + D +NLG 
Sbjct: 177 SGISNRYQGNHALAMRHGDGEALL-------TIDYWQGEETRNFNQDLYNREVDGYNLGF 229

Query: 230 SFIGERGYIGMAYGEQNNRYGLLGHEHAECHLDGIQWHCGEHDDEDEDDHDEEGGGVPYV 289
           S                + Y L      + HL+    +    +       D++   V + 
Sbjct: 230 S----------------HHYWLNDALRLKTHLEYFDDYAKRREGTSSIQKDDKWDLVSFY 273

Query: 290 DMRQKRW-------DLRGELS--DPLPG----------------FELARLRIGHSDYQHK 324
           + ++ +        D    LS  D L G                    R   G   Y+ +
Sbjct: 274 EYQRSQTRLASVGADYTANLSWMDTLEGKFYWRSTENITQTNRLMANDRSGAGILSYRRE 333

Query: 325 EIEGGEVGTRFNNDATDARL---------ELTHQPLFGW----------RGVLGAQTLRR 365
             + G     FN++A  A L         E  HQ  +G           + +   ++   
Sbjct: 334 LRDEG-----FNDEALGATLNAQKEWQQGEWLHQFAYGMSVDGHDYQRPKSIRRMESSGD 388

Query: 366 DFEALGEEAYVPQTLTRNHGLFLLEEYTAGAWRYELGLRHEWQDIDADGRPDTDH----- 420
           D +A  +E + P    R  G++  +    G W    GLR + Q + +    D  H     
Sbjct: 389 DLQA--DEPFAPAREYR-FGVYGQDNLLLGDWTLAAGLRFDAQKL-SPKNTDRIHGYKVV 444

Query: 421 ----SGTSMSAGAVWTFAPQYSLGFSLTRSQRLPSAEELYANGPHA---ATRTVELGNVD 473
               S  S SA   + + P+++   S     R PS ++ Y    H+    T  +   N  
Sbjct: 445 TMGSSEWSPSASISYQWHPEWNTYLSYNHGFRAPSYDKAYGASDHSFVPLTPFIIKPNNK 504

Query: 474 LEEETSHNAEITLRKFAGRTTFSLSVFRNEVDDFIYAADTGNDIGGGYREIEYRQQDAVL 533
           L  ETS + E+  +   G+T F ++VF +  D+FI     G D   G    +Y+    V 
Sbjct: 505 LRAETSDSFELGSKYDNGQTQFYVAVFYSIFDNFIDVKQVGYDNATGSVIQQYQNIAGVK 564

Query: 534 T-GAEGEVRFQATD 546
           T GAE  V  +  D
Sbjct: 565 TYGAEMSVMHRLDD 578