Pairwise Alignments

Query, 335 a.a., Site-specific recombinase XerD from Pseudomonas stutzeri RCH2

Subject, 304 a.a., Integrase/recombinase from Sinorhizobium meliloti 1021

 Score = 59.3 bits (142), Expect = 1e-13
 Identities = 70/253 (27%), Positives = 101/253 (39%), Gaps = 43/253 (16%)

Query: 113 ATRARWMLAGVTGKTANNRLGYLKAVYNELHKLDVIDYPCPFTRIRPVRLQERPLAYLTK 172
           AT   W L   + +   NRL  ++     LH  D   +  P   +     ++R   Y+  
Sbjct: 45  ATVHEWALQAPSPEQRRNRLLTVRRFALSLHAEDP-RHEVPSADLFGRASRKRRTPYIYS 103

Query: 173 PQ-ISELLDALQARTTSPHP-------AMVARICLATGARWGEAQALRLERIRGNALVFA 224
           P+ I  L+DA  AR   P         A +  +  ATG R  EA A+RL  +  + L+ A
Sbjct: 104 PEEIRRLIDA--ARRLGPDDSIRSLTYATMFGLIAATGMRVSEAIAIRLHDVTDDGLIIA 161

Query: 225 NTKSKRVRMVPVTPE--------LAAAIK----------KHWQTYGPFTNCIGVFRLVLL 266
            TK K+ R++P+           LA  +K           H  T   +   I VF  ++ 
Sbjct: 162 QTKFKKSRLLPLHTTTRRALDGYLATRLKAASQSDALFISHQGTPLAYPTVITVFLQIIR 221

Query: 267 STSIK---PPRGQASHILRHTFAAHFI--------MGGGHIVTLKEILGHASLNMTMRYA 315
           S  ++     RG   H LRHTFA   +            HI  L   LGHA +  T  Y 
Sbjct: 222 SIGLRGAPGSRGPRIHDLRHTFAVRSLEHCAHDSQAVARHITALSTYLGHAHVTDTYWYL 281

Query: 316 HLAPE---HLSDA 325
              PE   H+S+A
Sbjct: 282 QSTPELMAHMSEA 294