Pairwise Alignments

Query, 834 a.a., periplasmic nitrate reductase, large subunit from Pseudomonas stutzeri RCH2

Subject, 885 a.a., Nitrate reductase (EC 1.7.99.4) (from data) from Sinorhizobium meliloti 1021

 Score =  311 bits (798), Expect = 8e-89
 Identities = 228/790 (28%), Positives = 347/790 (43%), Gaps = 108/790 (13%)

Query: 45  KAPCRFCGTGCGVMVATREGRVVATHGDVKAEVNRGINCVKGYFLSKIMYGSDRLTQPLL 104
           K  C +CG GCGV+    +   V+  GD +   N G  C KG  L++ +    RL  P +
Sbjct: 6   KTTCPYCGVGCGVIARVGDDGAVSVKGDPEHPANFGRLCSKGSALAETLDLDGRLLHPEI 65

Query: 105 RMKDGKFDKQGEFQPITWDQAFDIMEEKYKAALKQGGPEAIGMFGSGQWTIWEGYAANKL 164
             +              W +A D++ E++  ++ + GP+++  + SGQ    + Y ANKL
Sbjct: 66  GGRRAG-----------WSEALDLVAERFSRSIAEHGPDSVAFYVSGQLLTEDYYIANKL 114

Query: 165 MKAGFRSNNIDPNARHCMASAAFGFMRTFGMDEPMGCYEDIEAADAFVLWGSNMAEMHPV 224
           MK    S NID N+R CM+S+  G  R FG D   G YED+E A+  VL GSN+A  HPV
Sbjct: 115 MKGFIGSANIDTNSRLCMSSSVAGHRRAFGSDTVPGAYEDLELAELVVLTGSNLAWCHPV 174

Query: 225 LWTRVTDRRLSAPNVKVAVMSTFEHRSFELADIPMIFNPQTDLVILNYIANHIIQSGAVN 284
           L+ R++  + + P +K+ V+      + ++AD+ +   P  D+ + N +  H+  SGAV+
Sbjct: 175 LYQRLSAAKANRPEMKIVVIDPRRTMTADIADMHLAIAPDGDVALFNGLLAHLAASGAVD 234

Query: 285 KDFIEKHTKFAKGATNIGYGLRPTDPLELKAENAAVANTWSDISFEDYAEFLKTYTLEYA 344
           +++I  +T                                    F++         L   
Sbjct: 235 RNYISNYTS----------------------------------GFDEAVAAASRLDLPAL 260

Query: 345 AKESGVPAERLQALAELYADPKVKVMSFWTMGFNQHTRGVWANNMIYNIHLLTGKISEPG 404
           +  +G+   +L+A   L+ +   KV++ ++ G NQ   G    N I N HL TG+I  PG
Sbjct: 261 STATGLTVAQLRAFFRLF-ETTEKVVTCYSQGVNQSAAGTDKVNAIINCHLATGRIGRPG 319

Query: 405 NSPFSLTGQPSACGTAREVGTFSHRLPADMAVANPKHRAIAEKIWKLPEGTIQEKPGFHA 464
             PFSLTGQP+A G  REVG  ++ L A M +    HR    + W  P  ++  KPG  A
Sbjct: 320 MGPFSLTGQPNAMG-GREVGGLANMLAAHMDIEKSLHRDQVRRFWGAP--SVASKPGLKA 376

Query: 465 VEQSRKLKDGVLKVYWTQVTNNMQAGPNVMQEILPGWRNPETFIIVSD-VYPTVSAQAAD 523
           V+  R + DG +K  W   TN + + P+   + +        F++VSD V  T +A+ A 
Sbjct: 377 VDMFRAVADGRIKALWIMATNPVVSMPDA--DAVEAAIKACPFVVVSDIVRDTDTARHAH 434

Query: 524 LILPSAMWVEKEGAYGNAERRTQFWHQLVTAPGEARSDLWQLVEFSKRFNVDEVWPAELL 583
           ++LPS  W EK+G   N+ERR       + APGEAR D WQL E  +R            
Sbjct: 435 VLLPSLGWGEKDGTVTNSERRISRQRPFLAAPGEARPDWWQLAEVGRRMG---------- 484

Query: 584 SKAPELKGKTLYDVLFKNGQ-VDKFPSDEITKGYANQEAEAFGFYLQKGLFEEYAEFGRG 642
                      +   F +G     F       G+ N+    F                  
Sbjct: 485 -----------FAAAFTHGSPAVIFAEHAALSGFENEGRRDFDI---------------- 517

Query: 643 HAHDLASFETYHETRGLRWPVVDGKETQWRYREGYDPYVEAGSEVQFYGYGDKKAIIFAL 702
            AH       Y   R  +WP   G   Q +            +E  FY + D +A + A+
Sbjct: 518 SAHAEIDGPAYDGLRPFQWPQPQGSAPQKK---------RFFAEGAFY-HPDGRARLVAV 567

Query: 703 PYDVPAEVPDKDYPFWLSTGRVLEHWHTGSMTQRVDELHQAVPDALVYMHPEDARKLNAR 762
               P    D  +PF L+TGRV +HWHT + T +   L   + +  V +HP DA+     
Sbjct: 568 EVPRPRSANDA-FPFTLNTGRVRDHWHTMTRTGKSARLSGHLAEPFVEIHPRDAQGAGIS 626

Query: 763 RGSVVKVISRRGEMQARIETRGRNKPPMGLVFVPFFDANKLINKVTLDA-----TDPISK 817
              +V + S  G    R     R     G +FVP    ++  +K  +DA     TDP+S 
Sbjct: 627 DADLVTLESPHGAAIVRALVTDRQAE--GNLFVPMHWNDQFASKARIDALVAPVTDPVSG 684

Query: 818 QTDYKKCAVK 827
           Q   K   V+
Sbjct: 685 QPASKNMPVR 694