Pairwise Alignments

Query, 834 a.a., periplasmic nitrate reductase, large subunit from Pseudomonas stutzeri RCH2

Subject, 676 a.a., formate dehydrogenase H subunit alpha selenocysteine-containing from Methanococcus maripaludis S2

 Score =  254 bits (649), Expect = 1e-71
 Identities = 201/785 (25%), Positives = 348/785 (44%), Gaps = 120/785 (15%)

Query: 48  CRFCGTGCGVMVATREGRVVATHGDVKAEVNRGINCVKGYFLSKIMYGSDRLTQPLLRMK 107
           C +CGTGCG+ +  ++G+VV +H   +  VN G  C+KG +  + ++  DRLT+PL++  
Sbjct: 11  CPYCGTGCGIDLVVKDGKVVDSHPFKRHPVNEGKVCIKGNYCYEFVHSEDRLTKPLIK-- 68

Query: 108 DGKFDKQGEFQPITWDQAFDIMEEKYKAALKQGGPEAIGMFGSGQWTIWEGYAANKLMKA 167
                K GEF   TWD+A D++  K    LKQ  P+ +  F   + T  E YA  K  + 
Sbjct: 69  -----KNGEFIEATWDEALDLIAGK----LKQYSPDEVAFFSCARGTNEESYALQKFART 119

Query: 168 GFRSNNIDPNARHCMASAAFGFMRTFGMDEPMGCYEDIEAADAFVLWGSNMAEMHPVLWT 227
             ++NN+D  AR   A    G    FG         D+  AD  +++GSN  E HP++  
Sbjct: 120 VLKTNNVDHCARI*HAPTVVGLGECFGSGAMTNSITDLAQADVLLIYGSNTFEAHPLIAR 179

Query: 228 RVTDRRLSAPNVKVAVMSTFEHRSFELADIPMIFNPQTDLVILNYIANHIIQSGAVNKDF 287
            +   + +   + +A+     H + ++AD+ +   P +++ ++N I N IIQ G  +++F
Sbjct: 180 SIVKAKENGTKI-IAIDPRTTHTA-KMADLHLKLIPGSNIDLINTITNIIIQEGMADEEF 237

Query: 288 IEKHTKFAKGATNIGYGLRPTDPLELKAENAAVANTWSDISFEDYAEFLKTYTLEYAAKE 347
           I+  T+                                   +++  + +  YTLE  A+ 
Sbjct: 238 IKNRTE----------------------------------GYDELKDVVSKYTLEKTAEL 263

Query: 348 SGVPAERLQALAELYADPKVKVMSFWTMGFNQHTRGVWANNMIYNIHLLTGKISEPGNSP 407
           SG+PAE +   A +Y   +      + +G  ++T GV       N+ ++TG +  PG   
Sbjct: 264 SGIPAETILEAARMYGSAE-NASIMYCLGVTEYTFGVDNVKSCCNLAMVTGNLGRPGTGV 322

Query: 408 FSLTGQPSACGTAREVGTFSHRLPADMAVANPKHRAIAEKIWKLPEGTIQEKPGFHAVEQ 467
             L GQ +  G A ++G   +  P    V     R   E +W+  +  +  + G  + E 
Sbjct: 323 NPLRGQNNVQG-ACDMGALPNVFPGYQKVGEAYERL--ENLWETAD--LNREIGLTSPEV 377

Query: 468 SRKLKDGVLKVYWTQVTNNM-QAGPNVMQEILPGWRNPETFIIVSDVYPTVSAQAADLIL 526
             K  + V  ++       +  A  N +++ L        F +V D++ T +A+ AD++L
Sbjct: 378 LHKAGEQVKFLHIVGEDPMVADADINHVEKALKSL----DFFVVQDIFLTETAKLADVVL 433

Query: 527 PSAMWVEKEGAYGNAERRTQFWHQLVTAPGEARSDLWQLVEFSKRFNVDEVWPAELLSKA 586
           P+A W EK+G + N+ERR Q                                    + KA
Sbjct: 434 PAACWAEKDGTFTNSERRVQ-----------------------------------RIRKA 458

Query: 587 PELKGKTLYDVLFKNGQVDKFPSDEITKGYANQEAEAFGFYLQKGLFEEYAEFGRGHAHD 646
            +  G  L D L      +K  +            E   F     +F+E A+    +A  
Sbjct: 459 VDAPGDALPDWLIVRKLAEKMGA-----------GEKLNFESASEIFDEMAKVIPQYAG- 506

Query: 647 LASFETYHETRGLRWPVVDGKETQWRYREGYDPYVEAGSEVQFYGYGDKKAIIFALPYDV 706
             SFE      GL+WP    ++          P +     ++  G G    +     +  
Sbjct: 507 -MSFERLG-IDGLQWPCKTPEDPG-------TPILHKEKFLRPNGLGKFTPV----EHKD 553

Query: 707 PAEVPDKDYPFWLSTGRVLEHWHTGSMTQRVDELHQAVPDALVYMHPEDARKLNARRGSV 766
             E+ D++YP  L+TGR++ H+++G+MT+R D +   + +  + ++ EDA++L  + G  
Sbjct: 554 ADELIDEEYPLILTTGRIIFHYNSGTMTRRCDSITNEIDENFIEINTEDAKELGIKPGEK 613

Query: 767 VKVISRRGEMQARIETRGRNKPPMGLVFVPFFDANKLINKVTLDATDPISKQTDYKKCAV 826
           V+V SRRG + A  + R       G+V++ F    +  NK+T  A DP+SK  + K CAV
Sbjct: 614 VRVSSRRGTVNA--DARVTENVIKGVVYMSFHFLEEATNKLTNSAYDPVSKTAELKICAV 671

Query: 827 KIEVV 831
           K+E +
Sbjct: 672 KVEKI 676