Pairwise Alignments

Query, 834 a.a., periplasmic nitrate reductase, large subunit from Pseudomonas stutzeri RCH2

Subject, 674 a.a., formate dehydrogenase subunit alpha from Methanococcus maripaludis JJ

 Score =  286 bits (732), Expect = 3e-81
 Identities = 223/788 (28%), Positives = 349/788 (44%), Gaps = 127/788 (16%)

Query: 48  CRFCGTGCGVMVATREGRVVATHGDVKAEVNRGINCVKGYFLSKIMYGSDRLTQPLLRMK 107
           C +CGTGCGV +  ++G +V T+   +  VN G  C+KG +  + ++  DRL  PL+R  
Sbjct: 10  CPYCGTGCGVDLVVKDGTLVGTNPFKRHPVNEGKTCIKGSYCHEFVHRDDRLKTPLIR-- 67

Query: 108 DGKFDKQGEFQPITWDQAFDIMEEKYKAALKQGGPEAIGMFGSGQWTIWEGYAANKLMKA 167
                K GE    +WD+A +++  K    L+   PE +G F S + T  + Y   K  + 
Sbjct: 68  -----KNGELVEASWDEALELISGK----LQNYSPEEVGFFSSARCTNEDNYVFQKFART 118

Query: 168 GFRSNNIDPNARHCMASAAFGFMRTFGMDEPMGCYEDIEAADAFVLWGSNMAEMHPVLWT 227
             ++NN+D  AR   ++   G  + FG         DIE AD   + GSN  E HP++  
Sbjct: 119 VIKTNNVDHCARLUHSATVVGLGQAFGSGAMTNSISDIEDADCIFIIGSNTFEQHPLIAR 178

Query: 228 RVTDRRLSAPNVKVAVMSTFEHRSFELADIPMIFNPQTDLVILNYIANHIIQSGAVNKDF 287
           RV   R      K+ V+      + + AD+ +   P T++ +LN I + +++   V+++F
Sbjct: 179 RVV--RAKEKGTKIIVIDPRYTPTAKQADLYLQLLPGTNIAVLNAIMHVLVKENLVDEEF 236

Query: 288 IEKHTKFAKGATNIGYGLRPTDPLELKAENAAVANTWSDISFEDYAEFLKTYTLEYAAKE 347
           I+  TK                                   +E+  + L+TYT EYA+K 
Sbjct: 237 IKNRTK----------------------------------GYEELKQTLETYTPEYASKL 262

Query: 348 SGVPAERLQALAELYADPKVKVMSFWTMGFNQHTRGVWANNMIYNIHLLTGKISEPGNSP 407
           SGV  E +   A++Y       +  + MG  Q T GV       N+ ++TG I +PG   
Sbjct: 263 SGVSPELIVEAAKMYGSANAASI-LYCMGITQFTTGVNNVKSCCNLAMITGNIGKPGTGV 321

Query: 408 FSLTGQPSACGTAREVGTFSHRLPADMAVANPKHRAIAEKIWKLPEGTIQEKPGFHAVEQ 467
             L GQ +  G A ++G   +  P   AV    H   AE  W      +    G    + 
Sbjct: 322 NPLRGQNNVQG-ACDMGALPNVFPGYQAVP-ANHEKYAE-AWNT---CVDPNVGLSIPDM 375

Query: 468 SRKLKDGVLKVYWTQVTNNMQAGPNV--MQEILPGWRNPETFIIVSDVYPTVSAQAADLI 525
             K  + V K  +    N M + P++  ++  L         +IV D++ T +AQ AD++
Sbjct: 376 LAKAGEQV-KCIYVMGENPMVSDPDIHHVEHALKSL----DLLIVQDIFLTETAQVADVV 430

Query: 526 LPSAMWVEKEGAYGNAERRTQFWHQLVTAPGEARSDLWQLVEFSKRFNVDEVWPAELLSK 585
           LP A W EK+G + N ERR Q  ++ V +PGEA +D W++V+                  
Sbjct: 431 LPGASWAEKDGTFSNTERRIQKINKAVDSPGEAIAD-WKIVKM----------------- 472

Query: 586 APELKGKTLYDVLFKNGQVDKFPSDEITKGYANQEAEAFGFYLQKGLFEEYAEFGRGHAH 645
                      +  K GQ                  E F F   + +F+E A+    +A 
Sbjct: 473 -----------LAEKMGQ-----------------GELFNFNTAEEVFQEIAKVTPQYAG 504

Query: 646 DLASFETYHE--TRGLRWPVVDGKETQWRYREGYDPYVEAGSEVQFYGYGDKKAIIFALP 703
                 TY      GL WP    ++          P +     +   G G+    IFA+ 
Sbjct: 505 -----VTYERLGVDGLHWPCKTCEDPG-------TPILHCEKCLTPDGLGN----IFAID 548

Query: 704 YDVPAEVPDKDYPFWLSTGRVLEHWHTGSMTQRVDELHQAVPDALVYMHPEDARKLNARR 763
           Y  P E+ D +YP  L+TGR++ H+HTG+MT+R   +   + +  V +HPEDA K+  + 
Sbjct: 549 YADPDEMADSEYPMTLTTGRIIFHYHTGTMTRRSKHMADEINEGFVEIHPEDAEKMGIKN 608

Query: 764 GSVVKVISRRGEMQARIETRGRNKPPMGLVFVPFFDANKLINKVTLDATDPISKQTDYKK 823
              VKV +RRGE+    +     K   G+VF+PF  A    N +T  A DP  K  +YK 
Sbjct: 609 KQKVKVSTRRGEVVVNAKITPNIK--QGVVFMPFHFAETAANILTNPAQDPNCKIPEYKV 666

Query: 824 CAVKIEVV 831
           CA K+E +
Sbjct: 667 CAAKVEKI 674