Pairwise Alignments

Query, 380 a.a., cytochrome d oxidase, subunit II (cydB) from Pseudomonas stutzeri RCH2

Subject, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

 Score =  451 bits (1159), Expect = e-131
 Identities = 216/380 (56%), Positives = 279/380 (73%), Gaps = 2/380 (0%)

Query: 1   MFDYEVLKLVWWVLIGVLLIGFALTDGFDMGAMALMPFVGKTDNERRVAINTIAPHWDGN 60
           MFDYE+L+L+WWVLIGVLL+GFA+TDGFDMG  AL+P +GK DNERRV IN+IAPHWDGN
Sbjct: 1   MFDYEILRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGN 60

Query: 61  QVWFITAGGALFAAWPMVYAVAFSGLYWAMLLVLFALFCRPVGFDYRSKVEDPRWRSAWD 120
           QVW ITAGGALFAAWP+VYA +FSG Y AM++ L AL+ RPVG DYRSK+E  +WR+ WD
Sbjct: 61  QVWLITAGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWD 120

Query: 121 WALFVGGAVPALVFGVAFGNLFLGLPFQLDELMRSTYQGSFFALLNPFALLCGIVSLSML 180
            A+   G +P ++FGVAFGNL  G+PFQL + +  TY GSFF LLNPFALLCG+VSL M 
Sbjct: 121 LAISASGFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMT 180

Query: 181 SAHGGAWLMLRTDGALAERSRQATRLCALVFLVGFLAAGLWLMLGVQGFTQLSVTDPGAA 240
              G AWL ++T   + +R+R   +L  L+  V F+AAG W+   + G+  +   D  AA
Sbjct: 181 LLQGSAWLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQ-HIDGYMIVGAIDGNAA 239

Query: 241 LNPLLDKQVVQDNAGWLGNYGRYPITLIAPVAGILGALLALLGSSRNSGGASFVGTSLMI 300
            NP L+K+V+++   WL N+ + P+  +AP  G+L  LL++L S  + GG +F+ +SL  
Sbjct: 240 SNP-LNKEVIREAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGN 298

Query: 301 VGSICTAGFALFPFVFPSSLDPASSLTIWDAVSSKKTLGIMFVVACIFVPLILCYTLWSY 360
            G I TAGFA+FPFV PSSL+PA SLT+WDA SSK TL +M VVA + VP+IL YT+WSY
Sbjct: 299 AGVIFTAGFAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSY 358

Query: 361 VRMWGRLNQKTIEANPHGLY 380
            +M+GRL+ K IE N + LY
Sbjct: 359 YKMFGRLDDKFIEDNKNSLY 378