Pairwise Alignments

Query, 380 a.a., cytochrome d oxidase, subunit II (cydB) from Pseudomonas stutzeri RCH2

Subject, 330 a.a., cytochrome BD ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

 Score =  118 bits (296), Expect = 2e-31
 Identities = 102/365 (27%), Positives = 168/365 (46%), Gaps = 59/365 (16%)

Query: 5   EVLKLVWWVLIGVLLIGFALTDGFDMGAMALMPFVGKTDNERRVAINTIAPHWDGNQVWF 64
           + L  ++ +L+G  +  +A+ DG+D+G   L+P       +R +A  +I P WD N+ W 
Sbjct: 3   QYLPEIYLLLLGFTVFMYAVLDGYDLGVGILLPRNDVAQRDRMIA--SIGPFWDANETWL 60

Query: 65  ITAGGALFAAWPMVYAVAFSGLYWAMLLVLFALFCRPVGFDYRSKVEDPRWRSAWDWALF 124
           + A G L  A+P  +++ F+ LY    L+L AL  R V FD+R+K +    +  WD    
Sbjct: 61  VLAVGILLIAFPTAHSLIFTELYLPTALMLIALIMRGVAFDFRAKAKADH-KDHWDLCFK 119

Query: 125 VGGAVPALVFGVAFGNLFLGLPFQLDELMRSTYQGSFFALLNPFALLCGIVSLSMLSAHG 184
           +G  + AL  G   G   +G          S  +   FA+L+   +    V +      G
Sbjct: 120 IGSLLAALTQGYMIGRYVVG--------FESAPEAYAFAVLSALCVAAAYVYI------G 165

Query: 185 GAWLMLRTDGALAERSRQATRLCALVFLVGFLAAGLWLMLGVQGFTQLSVTDPGAALNPL 244
           GAWL+L+T+G L  R+ + +R        G+LAA     LGV     LSV    + +NP 
Sbjct: 166 GAWLVLKTEGELQVRAARWSR------KAGWLAA-----LGV-----LSV----SLVNPW 205

Query: 245 LDKQVVQDNAGWLGNYGRYP-ITLIAPVAGILGALLALLG------SSRNSGGAS--FVG 295
           ++  V +        +  +P + L+APV  I+ A + ++        + N  G    F G
Sbjct: 206 VNSAVAE-------RWFSFPEVILLAPVPIIVFATILVVDRYLKRVPTVNDAGVQWPFFG 258

Query: 296 TSLMIVGSICTAGFALFPFVFPSSLDPASSLTIWDAVSSKKTLGIMFVVACIFVPLILCY 355
             L+   S     ++ FP + P        +T   A SS +TL ++ +   I +P IL Y
Sbjct: 259 VVLIFGLSFLGLAYSFFPEIVP------GIMTAQQAASSPETLMVVGIGVVIVMPTILLY 312

Query: 356 TLWSY 360
           T + Y
Sbjct: 313 TFFVY 317