Pairwise Alignments

Query, 380 a.a., cytochrome d oxidase, subunit II (cydB) from Pseudomonas stutzeri RCH2

Subject, 379 a.a., cytochrome d ubiquinol oxidase, subunit II (RefSeq) from Shewanella loihica PV-4

 Score =  468 bits (1203), Expect = e-136
 Identities = 223/380 (58%), Positives = 275/380 (72%), Gaps = 1/380 (0%)

Query: 1   MFDYEVLKLVWWVLIGVLLIGFALTDGFDMGAMALMPFVGKTDNERRVAINTIAPHWDGN 60
           MFDYE+L+ VWW LIGVL IGFA+TDGFDMG  AL+P +GK D ERR+ IN+IAPHWDGN
Sbjct: 1   MFDYEILRFVWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMINSIAPHWDGN 60

Query: 61  QVWFITAGGALFAAWPMVYAVAFSGLYWAMLLVLFALFCRPVGFDYRSKVEDPRWRSAWD 120
           QVW ITAGGALFAAWPMVYAV+FSG Y AM+LVLFALF RPVGFDYRSK+EDPRWR AWD
Sbjct: 61  QVWLITAGGALFAAWPMVYAVSFSGFYVAMMLVLFALFLRPVGFDYRSKIEDPRWRKAWD 120

Query: 121 WALFVGGAVPALVFGVAFGNLFLGLPFQLDELMRSTYQGSFFALLNPFALLCGIVSLSML 180
           WALFVGG VP L+ GVAFGNL  G+PF  DE +R+TY G  F LLNPF LL G+VS+SM+
Sbjct: 121 WALFVGGFVPPLIIGVAFGNLLQGVPFNFDEYLRATYHGGLFGLLNPFGLLAGLVSVSMI 180

Query: 181 SAHGGAWLMLRTDGALAERSRQATRLCALVFLVGFLAAGLWLMLGVQGFTQLSVTDPGAA 240
              G +WL ++T+G L  R+  AT++ A +  V F  AG+WL  G+ G+   S  D   A
Sbjct: 181 IMQGASWLQMKTEGELRVRAATATQVAAALVAVLFTLAGVWLANGIDGYVVTSTIDTHGA 240

Query: 241 LNPLLDKQVVQDNAGWLGNYGRYPITLIAPVAGILGALLALLGSSRNSGGASFVGTSLMI 300
            NP L K V  +   WL NY +YP+T++ P+ GI   +LALL S  N  G +F+ +SL +
Sbjct: 241 SNPAL-KTVAVEAGAWLANYDKYPVTMLFPILGIAMPVLALLASRFNRSGFAFLFSSLAV 299

Query: 301 VGSICTAGFALFPFVFPSSLDPASSLTIWDAVSSKKTLGIMFVVACIFVPLILCYTLWSY 360
              I T G A+FPFV PSSL+P  SLT+WDA +S  TL +M   A IFVP++L YT+W+Y
Sbjct: 300 AMVILTCGAAMFPFVMPSSLEPNVSLTMWDATASHMTLTVMTWAAAIFVPIVLSYTIWTY 359

Query: 361 VRMWGRLNQKTIEANPHGLY 380
            +M+GRL++  IE N   LY
Sbjct: 360 FKMFGRLSRSYIEDNKTSLY 379