Pairwise Alignments

Query, 380 a.a., cytochrome d oxidase, subunit II (cydB) from Pseudomonas stutzeri RCH2

Subject, 335 a.a., cytochrome d ubiquinol oxidase, subunit II (RefSeq) from Shewanella sp. ANA-3

 Score =  149 bits (376), Expect = 1e-40
 Identities = 96/363 (26%), Positives = 163/363 (44%), Gaps = 37/363 (10%)

Query: 7   LKLVWWVLIGVLLIGFALTDGFDMGAMALMPFVGKTDNERRVAINTIAPHWDGNQVWFIT 66
           L L+W+ +I    + + + DGFD+G   L PF+   D +R V +NT+AP WDGN+ W + 
Sbjct: 5   LPLIWFGIIIFATLMYIVMDGFDLGIGILFPFIHDED-DRDVMVNTVAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPMVYAVAFSGLYWAMLLVLFALFCRPVGFDYRSKVEDPRWRSAWDWALFVG 126
            G +L  A+P+ YA+    L   +L++L AL  R V F++R K      +  WD A   G
Sbjct: 64  GGASLLGAFPLAYAIVLEALTIPLLIMLLALIFRGVAFEFRFK-SSAETKPFWDKAFMFG 122

Query: 127 GAVPALVFGVAFGNLFLGLPFQLDELMRSTYQGSFFALLNPFALLCGIVSLSMLSAHGGA 186
             +     GV  G    G+      +    + GS F  L+PF+L CG   +   +  G  
Sbjct: 123 SIIATFAQGVVLGAFISGI-----SVDGQRFSGSSFDWLSPFSLFCGFGLMLAYALLGAT 177

Query: 187 WLMLRTDGALAERSRQATRLCALVFLVGFLAAGLWLMLGVQGFTQLSVTDPGAALNPLLD 246
           WL+ +  G L    +Q  ++ A+  L+      LW       F Q ++     +L  L  
Sbjct: 178 WLVKKCTGTLKTTMQQLAKVLAVCLLMTIGIVSLW-----TPFVQPNIALRWFSLPNLF- 231

Query: 247 KQVVQDNAGWLGNYGRYPITLIAPVAGILGALLALLGSSRNSGGASFVGTSLMIVGSICT 306
                        +   P+ ++     ++ AL      +       F+ T  +I      
Sbjct: 232 ------------YFAPVPLLVLLCTKALIRAL------NTEDDYRPFLLTLALIFLGFSG 273

Query: 307 AGFALFPFVFPSSLDPASSLTIWDAVSSKKTLGIMFVVACIFVPLILCYTLWSYVRMWGR 366
            G +++P + P       ++++W A + + +LG M + A + +PLIL YT WSY    G+
Sbjct: 274 LGISIWPHIIP------PTISLWQAAAPESSLGFMLIGALMIIPLILAYTFWSYYVFRGK 327

Query: 367 LNQ 369
           + +
Sbjct: 328 VTK 330