Pairwise Alignments

Query, 528 a.a., fagellar hook-basal body proteins from Pseudomonas stutzeri RCH2

Subject, 443 a.a., flagellar biosynthesis protein FlgE from Pseudomonas fluorescens FW300-N2E3

 Score =  236 bits (602), Expect = 1e-66
 Identities = 128/283 (45%), Positives = 171/283 (60%), Gaps = 17/283 (6%)

Query: 249 TAANGT-FNPADPTTYNSSTSLNIYDSQGNAHVMTQYFVKTSANTWDMKVLIDGRNPASP 307
           T A GT FNP    TY  S S  IYDSQGN+HVM QY VKT ANTW    L+DGRNP + 
Sbjct: 173 TVATGTPFNPNTLATYTKSFSTPIYDSQGNSHVMDQYMVKTGANTWKTYTLVDGRNPDAT 232

Query: 308 AQEPP--QPYVMGLTFDASGALTAIDNGGSGLFSVSPDRKVTLNSATGNPPSGGWIPA-I 364
             +P    P    +TFD +G L ++          +P       +A        W+P  +
Sbjct: 233 GSDPKVTAPIATTITFDTAGKLVSV---------ATPPATPAAPNAANTVTLANWVPGKV 283

Query: 365 SNGATPATWSANGALANPGGIVLDFSKSTQYASAFAVNSVAQDGYTTGELAGLEIDDTGV 424
           +NG     W+ANGA  +  G+V+  + +TQ+ +  A +  AQDGY TG++  L ID TG 
Sbjct: 284 TNGV----WAANGAAPSASGMVISMTNTTQFNADSARSIPAQDGYATGQITNLTIDGTGT 339

Query: 425 IFARYTNGQSKVQGQIILANFANVQGLTPVGKTQWVQSFESGEPVVGTPGSGTLGALQAG 484
           +FA ++N QSK  GQ+ LA+F N QGL  VG T W ++F SG P    P +G+LG++Q+ 
Sbjct: 340 LFANFSNNQSKAIGQVALASFTNEQGLQAVGGTSWKETFASGIPGYDAPETGSLGSIQSN 399

Query: 485 ALEDSNVELSDQLVNLIVAQRNYQANAKTIETESAITQTIINL 527
           +LE+SNV L+++LVNLI AQ NYQANAKTI T+S I QTII +
Sbjct: 400 SLEESNVNLTNELVNLIKAQSNYQANAKTISTQSTIMQTIIQM 442



 Score =  203 bits (516), Expect = 1e-56
 Identities = 123/272 (45%), Positives = 161/272 (59%), Gaps = 21/272 (7%)

Query: 1   MSFNIGLSGLRAASKDLNVTGNNIANAGTVGFKQSRAEFSDVYAASVLGTGKNPQGSGVL 60
           MSFNIGLSGL AA+K L+VTGNNIAN  T GFK SRAEF+DVY+A+ LG+G    GSGV 
Sbjct: 1   MSFNIGLSGLYAANKQLDVTGNNIANVATAGFKSSRAEFADVYSATKLGSGSKVVGSGVS 60

Query: 61  MSNISQQFNQGNINYTQNALDLAINGNGFFQISNNGAVSYTRAGYFGTDRSGFLVD-NFG 119
           ++N+SQQF QG+IN T N LD+ ING+GFF +SNNG+ +YTRAG F  D+ GF+ + N  
Sbjct: 61  LANVSQQFTQGDINNTGNVLDMGINGSGFFTLSNNGSTTYTRAGTFKVDKDGFITNTNQT 120

Query: 120 YKLQGFPVDGNGNLQNGVIGDLQIQTTNQAPKATSQINTAFNLNSTQK------------ 167
            +LQG+ VD NG + NGV+ DL+I T+N APK TS +++  NL+ST              
Sbjct: 121 ARLQGYGVDANGKVINGVLTDLKIDTSNLAPKPTSTVSSTINLDSTAPVIDDTVATGTPF 180

Query: 168 SPVTWQSAYDASLQPAYDAAYNTS-----LTTAGQAAYDAEFAVSG--DPALAEDARAAA 220
           +P T  +   +   P YD+  N+      +   G   +     V G    A   D +  A
Sbjct: 181 NPNTLATYTKSFSTPIYDSQGNSHVMDQYMVKTGANTWKTYTLVDGRNPDATGSDPKVTA 240

Query: 221 LVNATNITNAQAAGNAAKALPANQAAALTAAN 252
            + AT IT   A    + A P    AA  AAN
Sbjct: 241 PI-ATTITFDTAGKLVSVATPPATPAAPNAAN 271