Pairwise Alignments

Query, 528 a.a., fagellar hook-basal body proteins from Pseudomonas stutzeri RCH2

Subject, 434 a.a., flagellar hook protein FlgE from Vibrio cholerae E7946 ATCC 55056

 Score =  147 bits (370), Expect = 1e-39
 Identities = 90/283 (31%), Positives = 137/283 (48%), Gaps = 35/283 (12%)

Query: 255 FNPADPTTYNSSTSLNIYDSQGNAHVMTQYFVK--TSANTWDMKVLIDGRNPASP----- 307
           F+  DP TYN +TS  IYDS G  + +T Y++K    ANTW     +  +    P     
Sbjct: 178 FDITDPETYNRTTSSTIYDSMGQPYKLTTYYLKDMNQANTWQTYYTVTDKTGEKPINVVG 237

Query: 308 --AQEPPQPYVMGLTFDASGALTAIDNGGSGLFSVSPDRKVTLNSATGNPPSGGWIPAIS 365
             A  P       + F+  G L++++NG                     P  GG  P   
Sbjct: 238 GDAASPTGHVGHTMRFNNDGTLSSLNNG---------------QPIVTEPLGGGANPVDL 282

Query: 366 NGATPATWSANGALANPGGIVLDFSKSTQYASAFAVNSVAQDGYTTGELAGLEIDDTGVI 425
           NGA       N  L+           +TQ+A+ F +    QDG TTG L  ++ D+ G +
Sbjct: 283 NGA-----DVNQTLS------FSLDSATQFAAPFELTKFDQDGATTGFLTKIDFDENGSV 331

Query: 426 FARYTNGQSKVQGQIILANFANVQGLTPVGKTQWVQSFESGEPVVGTPGSGTLGALQAGA 485
            A Y+NG +   G++ L   AN QGL   G TQW  +  SG  + G    G+ G++  G+
Sbjct: 332 LATYSNGINTTLGRVALVRVANEQGLDKKGGTQWDATQFSGAKIWGESNKGSFGSISNGS 391

Query: 486 LEDSNVELSDQLVNLIVAQRNYQANAKTIETESAITQTIINLR 528
           LE SN++++ +LV+LI AQRN+QAN++ +E  + + Q I+ +R
Sbjct: 392 LEQSNIDMTQELVDLISAQRNFQANSRALEVHNGLQQNILQIR 434



 Score =  113 bits (283), Expect = 1e-29
 Identities = 70/172 (40%), Positives = 94/172 (54%), Gaps = 7/172 (4%)

Query: 5   IGLSGLRAASKDLNVTGNNIANAGTVGFKQSRAEFSDVYAASVLGTGKNPQGSGVLMSNI 64
           + LSGL AA  DLN T NNIANA T GFK+SRAEF DVY+ S+    K   G GV  + +
Sbjct: 4   VSLSGLSAAQMDLNTTSNNIANANTFGFKESRAEFGDVYSTSLFTNAKTTPGQGVQAAKV 63

Query: 65  SQQFNQGNINYTQNALDLAINGNGFFQISNNGAV----SYTRAGYFGTDRSGFLVDNFGY 120
           +QQF++G+  YT N LDL I G GFF ++ +  V      TR G F  D++ F+V     
Sbjct: 64  AQQFHEGSSIYTNNPLDLRIAGTGFFAVAKDRLVPQQNELTRNGAFHLDKNSFMVTANDE 123

Query: 121 KLQGFPVD-GNGNLQNGVIGDLQIQTTNQAPKATSQINTAFNL--NSTQKSP 169
            L G+ V+   G++ +     + I      PK T+ I+   NL  N   K P
Sbjct: 124 FLLGYEVNPDTGDVLSYEPKPINIPPQFGKPKQTANIDLGANLPANGDLKDP 175