Pairwise Alignments

Query, 104 a.a., competence protein ComEA helix-hairpin-helix repeat region from Pseudomonas stutzeri RCH2

Subject, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

 Score = 40.8 bits (94), Expect = 3e-08
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 35  AAVTQASVNLNTADAATLTRELKGIGATKAKAIVDYREEHGPFSSVDELLEVKGIGSATL 94
           ++V    V+LNTA + +L   + GI    AK IV YR E+G F S  ELL+V  +G    
Sbjct: 476 SSVNSVGVDLNTA-SVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELLKVSKLGKKAF 534

Query: 95  QKIRSQLSV 103
           ++    L +
Sbjct: 535 EQCAGFLRI 543