Pairwise Alignments

Query, 381 a.a., pilus retraction protein PilT from Pseudomonas stutzeri RCH2

Subject, 368 a.a., twitching motility protein PilT from Vibrio cholerae E7946 ATCC 55056

 Score =  417 bits (1073), Expect = e-121
 Identities = 208/350 (59%), Positives = 274/350 (78%), Gaps = 2/350 (0%)

Query: 1   MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGKIMPVSKTAMSPEMTRETVHGVMNEQQR 60
           ME  + L  M+    SDL+IT G P   +V+G++    +     ++T   +H +M++ ++
Sbjct: 1   MELNQYLDGMLTHKASDLYITVGAPILYRVDGELRAQGEALSVADVTA-LLHAMMDDARQ 59

Query: 61  REFTENHECNFAISARGIGRFRVSAFYQRNLAGMVLRRIETNIPTIEELKLPDVLKKLSM 120
            EF +  E NFA+  R  GRFRVSAF+QR L G V+RRIET IPT EELKLP+VL+ L++
Sbjct: 60  AEFKQTREANFAV-VRDSGRFRVSAFFQRELPGAVIRRIETRIPTFEELKLPEVLQNLAI 118

Query: 121 TKRGLVLFVGATGTGKSTSLASMIGYRNKNSSGHIISIEDPIEFIHQHQSCIVTQREVGI 180
            KRGLVL VGATG+GKST++A+M GYRN++ +GHI+++EDPIEF+H+H+ CIVTQREVG+
Sbjct: 119 AKRGLVLVVGATGSGKSTTMAAMTGYRNQHRTGHILTVEDPIEFVHEHKRCIVTQREVGL 178

Query: 181 DTSSFEVALKNTLRQAPDVILIGEIRTRETMDYAVAFAETGHLCLATLHANNANQALDRI 240
           DT S+EVALKN+LRQAPD+ILIGEIR+RETM+YA+ FAETGHLC+ATLHANNANQAL+RI
Sbjct: 179 DTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERI 238

Query: 241 INFFPPDRHNQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLINTPLAADLIRKGEVH 300
           ++  P ++  Q  +DLSLNLK ++AQQL+   +GKGR  V EVL+N+P  ADLIR+GE+H
Sbjct: 239 LHLVPKEQREQFLLDLSLNLKGVIAQQLLRDKNGKGRHGVFEVLLNSPRIADLIRRGELH 298

Query: 301 ELKSLMKRSTELGMQTFDQALYNLYVQGEITYEDALLHADSANDLRLLIK 350
           ELK+ M RS E+GMQTFDQALY L V  +I+ +DAL  ADSANDLRL++K
Sbjct: 299 ELKATMARSQEVGMQTFDQALYQLVVDDKISEQDALHSADSANDLRLMLK 348