Pairwise Alignments

Query, 344 a.a., pilus retraction protein PilT from Pseudomonas stutzeri RCH2

Subject, 368 a.a., twitching motility protein PilT from Vibrio cholerae E7946 ATCC 55056

 Score =  248 bits (632), Expect = 2e-70
 Identities = 139/339 (41%), Positives = 210/339 (61%), Gaps = 3/339 (0%)

Query: 1   MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPAMDHKQVHALIYDIMNDKQR 60
           M++ + L       ASDL+++ G P + RVDG++R     A+    V AL++ +M+D ++
Sbjct: 1   MELNQYLDGMLTHKASDLYITVGAPILYRVDGELRAQG-EALSVADVTALLHAMMDDARQ 59

Query: 61  KDFEEFLETDFSFEVPGVARFRVNAFNQNRGSGAVFRTIPSKVLTMEDLGMGEVFRKITD 120
            +F++  E +F+  V    RFRV+AF Q    GAV R I +++ T E+L + EV + +  
Sbjct: 60  AEFKQTREANFAV-VRDSGRFRVSAFFQRELPGAVIRRIETRIPTFEELKLPEVLQNLAI 118

Query: 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHR 180
             RGLVLV G TGSGKSTT+AAM  Y N  +  HILT+EDPIEFVHE K+C+V QREV  
Sbjct: 119 AKRGLVLVVGATGSGKSTTMAAMTGYRNQHRTGHILTVEDPIEFVHEHKRCIVTQREVGL 178

Query: 181 DTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV 240
           DT  +  AL+++LR+ PD+IL+GE+R  ET+  A+T AETGHL   TLH  +A + ++R+
Sbjct: 179 DTESYEVALKNSLRQAPDMILIGEIRSRETMEYAMTFAETGHLCMATLHANNANQALERI 238

Query: 241 VDVFPAEEKSMVRSMLSESLQAVISQTLLK-KVGGGRVAAHEIMIGTPAIRNLIREDKVA 299
           + + P E++      LS +L+ VI+Q LL+ K G GR    E+++ +P I +LIR  ++ 
Sbjct: 239 LHLVPKEQREQFLLDLSLNLKGVIAQQLLRDKNGKGRHGVFEVLLNSPRIADLIRRGELH 298

Query: 300 QMYSSIQTGGSLGMQTLDSCLKGLLAKGLISRDSAKEKA 338
           ++ +++     +GMQT D  L  L+    IS   A   A
Sbjct: 299 ELKATMARSQEVGMQTFDQALYQLVVDDKISEQDALHSA 337