Pairwise Alignments

Query, 344 a.a., pilus retraction protein PilT from Pseudomonas stutzeri RCH2

Subject, 370 a.a., twitching motility protein (RefSeq) from Shewanella loihica PV-4

 Score =  250 bits (638), Expect = 5e-71
 Identities = 133/344 (38%), Positives = 208/344 (60%), Gaps = 1/344 (0%)

Query: 1   MDITELLAFSAKQGASDLHLSAGLPPMIRVDGDVRRINLPAMDHKQVHALIYDIMNDKQR 60
           M++   L    ++ ASDL ++AG PP  +VDG+VR +        Q    +  +M + QR
Sbjct: 1   MEVRPFLKVMVERKASDLFITAGFPPSAKVDGEVRPLAENPFTPAQSLEFVEALMTEAQR 60

Query: 61  KDFEEFLETDFSFEVPGVARFRVNAFNQNRGSGAVFRTIPSKVLTMEDLGMGEVFRKITD 120
           K+F E  E +F++   G+ RFRV+AF Q    G V R I +K+  +EDL +  + + +  
Sbjct: 61  KEFHETRECNFAYGEKGLGRFRVSAFWQRESPGCVMRRIETKIPLVEDLKLPPILKDLVM 120

Query: 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHR 180
             RGL+++ G TG+GKST+LAA++ Y N+    HILTIEDP+EFVH+ +K ++ QREV  
Sbjct: 121 SKRGLIIMVGGTGTGKSTSLAALVGYRNSHARGHILTIEDPVEFVHDHRKSIITQREVGI 180

Query: 181 DTLGFSEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV 240
           DT  F  AL+S+LR+ PD+IL+GE+R  ET+  AL+ AETGHL   TLH  +A + +DR+
Sbjct: 181 DTDSFDAALKSSLRQAPDVILIGEIRTQETMEFALSFAETGHLCMATLHANNANQALDRI 240

Query: 241 VDVFPAEEKSMVRSMLSESLQAVISQTLLKKVGG-GRVAAHEIMIGTPAIRNLIREDKVA 299
           + + P  +   +   LS +L+ +++Q L+ K  G GR AA E++I TP + ++I+++++ 
Sbjct: 241 MHLVPESKHQQLLFDLSLNLRGIVAQQLVPKADGTGRRAAIEVLINTPRVASIIQKNELH 300

Query: 300 QMYSSIQTGGSLGMQTLDSCLKGLLAKGLISRDSAKEKAKQPEN 343
            +  ++      GMQT D  L  L  +G IS   A   A  P +
Sbjct: 301 LLKETMAKSNEQGMQTFDQALLKLYVEGEISYSDALHHADSPND 344