Pairwise Alignments

Query, 856 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

Subject, 984 a.a., TMAO reductase system sensor histidine kinase/response regulator TorS from Vibrio cholerae E7946 ATCC 55056

 Score =  166 bits (419), Expect = 8e-45
 Identities = 110/343 (32%), Positives = 187/343 (54%), Gaps = 16/343 (4%)

Query: 487 ERKRVEQMKNDFVSTVSHELRTPLTSISGALGLIVGGALGSAPASMQQMLEIAYRNSLRL 546
           + ++  + K+ F++T+SHE+RTP+  + G   L+    L S   + Q  +++  R+   L
Sbjct: 462 QAEQASRAKSAFLATMSHEIRTPMNGVLGTARLLQDTTLTS---TQQHYVQVINRSGRSL 518

Query: 547 GHLINDLLDMEKIAAGKMSFELREHSLGDLLEESLASNQALCEQHGIRCSLDHPVDVLVW 606
             ++ND+LD  KI AG +        L  L+ E+    Q+   + GI  +     DV  +
Sbjct: 519 LAILNDVLDYSKIEAGHLEIHHTHFDLYRLVSETHELMQSRAREKGITLTYHIDEDVTQY 578

Query: 607 VDG--MRLQQVLGNFLSNAVKFTPQGG-EIRLHSSLRGPRVRISVTDQGPGIPEAFRSRV 663
             G  +R+ QVL N + N +KFT QG   IR+  +  G  +R +V D G GI E  ++ +
Sbjct: 579 WQGDEIRIGQVLNNLVGNGIKFTDQGEVRIRIRLAPDGQGIRFAVEDSGIGIAEEEQATL 638

Query: 664 FEKFAQADASDSRQKSGTGLGLAITKELIERMGGTVGFDCPPGQGTTFWCELPI---QQL 720
           F+ F QADA   R+  GTGLGLAI+++L++ MGG +      GQG+ FW  LP+   + +
Sbjct: 639 FDAFTQADAG-RRKLGGTGLGLAISRKLVQAMGGELQLASQLGQGSCFWFTLPLPVGEPV 697

Query: 721 ASETDSRDDLP--RILVVEDEPDTGRLLHMMLREGGYGVERVQSLHQAREKLAAGRYEAM 778
            +   + DD+P   +L+VED      +    L   G+ V   +S+ +A+      R++  
Sbjct: 698 ETPALAVDDVPVANVLLVEDNEVNCLVAQGFLTSLGHQVTLAKSVQEAKLCFQQQRFDIA 757

Query: 779 TLDLHLPDGSGMQLIDELRE-KPAMQN--LPIVVISAAHQFDQ 818
            LD+HLPDG+G+ L+ +LR+ + ++ N  +P + +S AH F++
Sbjct: 758 LLDIHLPDGNGVDLLRDLRQMEDSIHNAVIPFIAVS-AHVFNE 799